Pseudomonas sp. LAIL14HWK12:I9, D903_RS0112615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGCTTTTTAAATTTTAATGATTCTCGACTCCAACACGGGCGCGAGCCGGCTTCACCCCGTGTTTACGGGACTTTCTGACCCTCGGTAGCAGGTTTTGT GAAAATTTCATGAAGTGTTGCGAATTTTGAGCACGCTTGTTGCATTCCCTTCACGCCAAGTCGGCACGACATCTGCAATGGCAGGTGAACGCGACAAATA ACAACAGCGGCATTGGTTACCAGGGAGTTCCCCTAACCTAAACCGGTAATTACAGGTTTGTTACGGTGACAGGAACAGCGCTGGCGTTGTACGGCCCTAA ACCGGGGCGTGATTTGCGACATGGAAATACCTAAAAGCGACAGGGTGAAAAAGTTCCGAAAAGAGTGCTTATAGCCATATCGCCAACAACAGTCAGCGTG CTATACATTTTCGCCGACATAACAAGAAAGAGCTGCTCCATATAACTAAAACACATGGATGCAGCGGTACTCTTCCTAAAAACCAAAGGAGCAAATCACG
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| DNA Sequence for Gene |
>D903_RS0112615
ATGCGCGTGATGAAGTGGAGCATGATCGCCCTGGCCGTTGCGGCAGGGACCTCGCAGTTGGCAATGGCCTCGGCACAAGACGAGTCCAAAGGTTTCCTCG AAGACAGCAAGCTGAACGTAAAAACCCGCATGCTGTACTTCAGCCGTGACTTCCGTAACAACGACAGCGGCAAGAGCCGCGTCGAAGAAACCGGCCTGGG CTTCCTGGGTACCTTCGAGTCGGGCTTCACCCAAGGCACCGTGGGCTTCGGCGTTGACGCCATCGGCATGCTGGGCCTGAAACTGGACAGCGGCAAAGGC CGCGCCGGCACCGGCCTGTTCCCGACCGGTTCCGACGGCCGTTCGCAAGATGATTACTCCGAAGGCGGCGGTGCAGTTAAACTGCGCGTCTCCAATACCG TGCTGAAGTTCGGCGACCAGTTCACCGCCCTGCCGGTATTAGCCACCGACGACAGCCGACTGCTGCCAGAAGTTGCTGAAGGCGGCCTGATCACCAGCAA CGAAATCGATGGCCTGACCCTGCACGCCGGTCACTTCACTGCCCTGAACGCGCAGGCCCAGACTTACCACGACAGCCTGCGCCTGACCGAGGCCAACGTC TTCGGTGGCACCTATGCCATCAACGAAAACCTCAGCACCAGCGTCTACTACTCGCGCATCGAAGATCACTTCCGCAAGTGGTACGGCAACATCAACTGGG CGCTGCCGATCAGCGACAAACAAGGCCTGGTGTTCGACTTCAACATCTATGACACCAAGTCCATCGGCGACAACCTGACCGGCGCCTTCGTCAGCAAGGC TGACGGCAGCAACGAACTGGACAACATCGCAGCCAGCCTCTCGGCCGCCTACAACATTGGCGCCCACACCTTCACCCTGGCTTACCAGAAAGTCAGCGGC GACGGCGACTACGCCTACGGCGTCGACGGTGGCGGCACCATCTTCCTGGCCAACTCCGTTGCCCGCTCCGACTTCAACGCCGAAGACGAGAAGTCCTGGC AGGCTCGCTACGACCTGAACTTCGCCGAATACGGCGTACCTGGCCTGACCTTCATGACCCGCTATGTGCGCGGTTCCGGTGCCACGACCGAAAGCACCAA CAACGGTAAGGAATGGGAACGCGACGTAGACGTCAAGTACGTGCTGCAAAGCGGCCCGGCCAAAGACCTGAGCTTGCGCGTACGTCAGGCCACCTACCGT TCCGCCGACGGCGTTTACTACGGTTCGAGCTCGATCGACGAGCTGCGCCTGATCGTGGAATACCCGCTGAGCATCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGGCTTGCAGTGCCCCGCACCTGAAAAAGCCCGGCGATCACGCCGGGCTTTTTCTTGGCTGACAAGCGTCACGCCCTGGGGCATCCTGTACGCCTTC GTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTTAGGCAATCGACACGGCTAACCATGCGCACCAGTCAATATTTGCTCGCCACCCAGAAAGAAA CCCCTGCCGACGCAGTGGTCATCAGCCATCAGCTCATGCTGCGTGCCGGCATGATCCGCAAACTGGCCTCCGGCCTGTACACCTGGCTGCCGATGGGCCT GCGGGTAATGCGCAAGGTCGAAGCCGTGGTACGCGAGGAAATGAACGCCGCCGGCGCCCTGGAAGTGCTGATGCCAAGCATTCAGCCCGCCGAGCTGTGG CAGGAGTCCGGCCGTTGGGAACAGTACGGCCCAGAGCTGCTGCGCCTGAAGGATCGCCACCAGCGTGATTTCTGCGTTGGCCCGACCCACGAAGAAGTCA
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| Amino Acid Sequence |
>membrane protein
MRVMKWSMIALAVAAGTSQLAMASAQDESKGFLEDSKLNVKTRMLYFSRDFRNNDSGKSRVEETGLGFLGTFESGFTQGTVGFGVDAIGMLGLKLDSGKG RAGTGLFPTGSDGRSQDDYSEGGGAVKLRVSNTVLKFGDQFTALPVLATDDSRLLPEVAEGGLITSNEIDGLTLHAGHFTALNAQAQTYHDSLRLTEANV FGGTYAINENLSTSVYYSRIEDHFRKWYGNINWALPISDKQGLVFDFNIYDTKSIGDNLTGAFVSKADGSNELDNIAASLSAAYNIGAHTFTLAYQKVSG DGDYAYGVDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGVPGLTFMTRYVRGSGATTESTNNGKEWERDVDVKYVLQSGPAKDLSLRVRQATYR SADGVYYGSSSIDELRLIVEYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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