Pseudomonas sp. LAIL14HWK12:I9, D903_RS0111385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGCCACTGGCGACAGCACGCGCGCGCCGTGGGGTGCCGAGGACCTGGCGCGCTTTACCCGCCTGGTGCAGGATGCGGTCGGCTTCGATGCCAGCCGT GGCGACAGCGTGACGGTGATCAACGTACCGTTCGCCGCCGACCGTGGCGAAGAAATTGCCGATATCGCCTTCTATCAGCAGCCGTGGTTCTGGGACATCG TCAAGCAGGTGTTGGGCGTAGTGTTCATCCTGGTGCTGGTGTTCGGTGTGCTGCGGCCTGTGTTGAACAACATTACAGGGGGCGGCAAGCAGGCTGCCCC GGACAGCGACATGGAGCTGGGCGGCATGATGGGTCTGGATGGCGAACTGGCCAACGACCGCGTCAGTCTGGGTGGCCCGACAAGCATTCTGCTGCCTAGC CCGAGCGAGGGTTACGAGGCACAGCTCAACGCAATCAAAGGCCTGGTGGCCGAAGACCCGGGCCGCGTTGCCCAGGTCGTGAAAGAGTGGATCAACGCCG
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| DNA Sequence for Gene |
>D903_RS0111385
ATGAGTGATAACCGAGCCGTTACCGCCAAGCTGAGCCGCGTCGACAAGGCGGCGATCCTTCTGCTCTCGCTGGGCGAGACCGATGCGGCCCAGGTGCTGC GGCACATGGGGCCCAAGGAGGTGCAGCGGGTGGGTGTGGCCATGGCGCAGATGGGCAATGTGCACCGTGACCAGGTGGAGCAGGTGATGAGCGAGTTCGT CGACATCGTCGGCGACCAGACCAGTCTGGGCGTGGGTTCCGATGCCTACATCCGCAAGATGCTCAACCAGGCATTGGGCGAGGACAAGGCCAATGGCCTG GTCGACCGCATCCTGCTCGGTGGCAACACCAGCGGCCTGGACAGCCTGAAGTGGATGGAGCCGCGTGCTGTCGCGGACGTGATCCGCTACGAGCACCCGC AGATCCAGGCCATCGTGGTGGCCTACCTCGATCCGGACCAGGCCGGTGAAGTGCTGAGCAACTTCGACCACAAGGTGCGCCTGGACATCGTCCTGCGCGT GTCGTCGCTGAACACCGTGCAGCCTGCGGCGTTGAAGGAGCTGAACCAGATCCTCGAGAAGCAGTTCTCGGGCAACTCCAACGCAGCACGCACCACCCTG GGCGGCATCAAGCGTGCTGCCGACATCATGAACTTCCTCGATAGCTCCGTGGAAGGTGCACTGATGGACGCGATCCGCGAAATCGACAGCGACCTGTCGG AGCAGATCGAGGACTTGATGTTCGTCTTCAACAACCTGGCCGACGTCGACGATCGCGGTATCCAGGCGCTGTTGCGTGAAGTGTCGTCCGACGTGCTGGT GGTGTCGCTCAAGGGCGCCGACGAGCGGGTCAAGGACAAGATCTTCAAGAACATGTCCAAACGTGCTTCGGAGCTGCTGCGCGACGACCTGGAGGCCAAG GGGCCGGTACGGGTCAGCGACGTGGAAACGGCACAGAAGGAAATCCTTACTATTGCCCGGCGTATGGCCGAGGCTGGCGAGATCGTGCTCGGCGGCAAAG GCGCCGAGGAAATGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCTTGCGGGCCTTGAGGGGCCTTGTGGGAGCGGGCTTGCCCCGCGAACACCGGCAACGCCGGTGCCATACACCGCGGCGCCTGCTTCGCGGGACAAG CCCGCTCCCACAGGGGTCAAACCCGTCTCCCTATTGAATAGGGTTTTGAGTACCTGAAAACATGTCCACCAAAGAACATCACCCCAGCGACCTGATCCGC GCCCGCGACCTTGAGGGCGTGGACGTGTGGGCGCTGCCCAGCTTCGACCCGGAACCGGAGCCCGAACCGGAGCCTGAGCCTGAACCCGAGGTCATCGAGG AAGTCGAGGAAGTGCCGCTGGAAGAAGTCCAGCCGCTGACCCTGGAAGAACTCGAAGCGATCCGGCAAGAGGCCTACAACGAGGGTTTTGCCACCGGTGA GCGTGAAGGTTTTCACAGCACCCAGCTCAAAGTCCGCCAGGAGGCCGAAGAGGCCTTGAAGACCAAGCTGGACAGCCTTGAGCGGCTGATGGCCAACCTG
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| Amino Acid Sequence |
>flagellar motor switch protein FliG
MSDNRAVTAKLSRVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMGNVHRDQVEQVMSEFVDIVGDQTSLGVGSDAYIRKMLNQALGEDKANGL VDRILLGGNTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDPDQAGEVLSNFDHKVRLDIVLRVSSLNTVQPAALKELNQILEKQFSGNSNAARTTL GGIKRAADIMNFLDSSVEGALMDAIREIDSDLSEQIEDLMFVFNNLADVDDRGIQALLREVSSDVLVVSLKGADERVKDKIFKNMSKRASELLRDDLEAK GPVRVSDVETAQKEILTIARRMAEAGEIVLGGKGAEEMI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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