Pseudomonas sp. LAIL14HWK12:I9, D903_RS0108785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGCGCCTAAAGAACGCGTCAATATCAAATACGTCCCCGCTACGAGCGATGAGCAGGCTGAGGTGGAGCTGCCCCACAAAATGCTGGTACTGGGCGACT TCGGCCTGGACGAAGACCGCGCGCTCGAGGACCGCCAGGTGATGCGAGTCGACAAACACACGTTCAACAGCGTGTTGAACGACGCCAACGTGAGCCTGGC GGTATCTGTGCCTTCCGTGCTCAGTGCAGCCCCGGATGCCGAGCTGGCGGTCCATCTGCAGTTCAGGTCCATCAACGATTTCGGGCCGGACCGTATCGCG CGGCAGGTACCCGAGCTGAACAAGCTGCTGGAACTGCGCGAGGCGCTGGTCGCCCTGAAAGGCCCGCTTGGCAACGTCCCGGCCTTCCGCAAGCAATTGC AACACCTGCTGAACAACGAGCAAGCCCGTAAACAGCTCGCACAAGAACTGGACCTGGTACCTGAAGCGCCAGAAAAAGACTGAGACAATGGAGCGTCCCC
|
|
| DNA Sequence for Gene |
>D903_RS0108785
ATGCCTAATCCAAACACCACCACCCTCACCACAGACGCAACCATCGATACATTGGGCAATGGCACCTTGCTCGACCAGATCATGGCAGAAACCAAACTGG TACCTACTCAGGAGGGCTATCAGGTTGCCAGGCAGGGCGTATCTGCCTTCATCGCCGAAATCCTCAAGAGCAATGACCCGGATCAATTGATCAACAAGCA CCGGGTCGACCAGATGATTGCTGAGGTTGACCGGGTTCTCGGCAAACAGATGGATGCCATTTTGCATCAACCCGAGTTTCAGCGGCTTGAATCCTCATGG CGGAGCCTGAAACTTCTGGTCGACCGCACGAACTTCAGGGAGAACATCAAGCTCGAAATTTTGCACATCAGCAAAGAGGACTTGCTCGACGACTTCGAAA ATGCCGCAGACATTACCTGCAGCGGCCTCTACAAACATGTTTACACCGCCGGGTACGGCCAGTTCGGGGGAGAGCCGGTTGCGGCCATGGTAGGCAACTA CAACTTTGGCCCTGCCTCCGCGGACATCAAACTGTTGAGTTACATGGCCTCCGTAGGTGCCATGTCCCACGCGCCCTTCCTGGCCGCACCTTCCCCCGAG TTCTTCAACTTGAGCAGCTTTGAAGAGTTGCCCAACCTCAAGGAAATAAAAGACCTCTTCGCCGGCCCACGTCATGCCAAGTGGCGCGCTTTTCGCGAAA GCGAAGACGCACGTCATGTCGCGCTGACCGGACCACGCTTCATGCTGCGCTCCGCCTACCATCCGCAAGAAAAGCCAATCGAGAGCTTCAACTACAACGA AGACATCGCCGGGCGGCATGACCACTACCTGTGGGGCAATTCCGCCTTCCTGCTGGCCAGTTGCATCAACGACAGCTTCGCCCGCTACCGCTGGTGCCCG AACATCATCGGCCCGCAATCGGGTGGTGCGGTCGAAGACTTGCCAGTCCACCTGTACGAGTCACTGGGGCAATTGCAGGCCAAGATTCCTACCGAAGTGC TGATTTCCGATCGCAAGGAGTTCGAGCTCGCCGAAGAGGGCTTCATCGCCCTGACCATGCGCAAAGACAGCGACAATGCAGCGTTCTTCTCAGCCAACTC GGTGCAAAAACCCAAGAACTTCCCGAAAACCCCCGAGGGGCTGCAGGCACAGACCAACTACAAGCTGGGGACCCAGCTGCCCTATCTGTTCATCGTCAAC CGCCTGGCACACTACATCAAAGTGCTGCAGCGCGAACAGATCGGCAGCTGGAAGGAACGCCGAGACCTTGAGTCCGAGCTGAACAAGTGGATCAAGCAGT ATGTCGCCGACCAGGAAACCCCCTCTGCCGACGTTCGCAGCCGCCGGCCGCTACGTGCCGCCCGTATTGAAGTCTCGGATGTTGCCGGTGACCCAGGCTG GTATCAGGTTTCGATCGCCGTGCGTCCGCACTTCAAGTACATGGGCGCGAACTTCGAGATCTCTCTGGTCGGGCGGCTCGATACGCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTGGTTTTTTTGAACGCTTGACGGTGGATCAGAGTACCCGTCCGCAGGCCACTCGACAGGAAAGCGCTGCGCACACGTTCGCCACCATCAAACGCCACCT CGAAACGCTGCTCAACGCCCGCCAGGGGTGCTCTCAGAGCAGTCCTGAGCTGGGCTTGCGTGACTTCAACTGGCATGACGTGAACCGCGGCGACTTGCTC GTACACGTGAGCGCGGATATTCGCCGCACCCTCCAGCGCTTCGAACCACGTATCCAGATACGCACGCTCAAGGTAGTGCCCGATAGCCATGCCCCGCTGG AGCTGCATTTCAGGCTCGATTGCCAGGTGCAGGTCAACAACCACGCAGAGCAGCTGCAACTCGAGCTGCTGGTCAACGGGCACAACCGCTACACCCGAGT GAGGTGACCGATGTCACTGAAAGACCGCTTCAGCGAAGAGCTGCGTTACCTGCACGAACTGGGGAACGACTTCGCCAAGGACAACCCACAACTTGCAAGG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MPNPNTTTLTTDATIDTLGNGTLLDQIMAETKLVPTQEGYQVARQGVSAFIAEILKSNDPDQLINKHRVDQMIAEVDRVLGKQMDAILHQPEFQRLESSW RSLKLLVDRTNFRENIKLEILHISKEDLLDDFENAADITCSGLYKHVYTAGYGQFGGEPVAAMVGNYNFGPASADIKLLSYMASVGAMSHAPFLAAPSPE FFNLSSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHVALTGPRFMLRSAYHPQEKPIESFNYNEDIAGRHDHYLWGNSAFLLASCINDSFARYRWCP NIIGPQSGGAVEDLPVHLYESLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKNFPKTPEGLQAQTNYKLGTQLPYLFIVN RLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQETPSADVRSRRPLRAARIEVSDVAGDPGWYQVSIAVRPHFKYMGANFEISLVGRLDTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|