Pseudomonas sp. LAIL14HWK12:I9, D903_RS0102545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGATCCTGGAAACCCTGACCGCGCTGGGCACCCAGCAGATCATGGCCCAGGCCTACCTGCCGGCCATCAAGGACGGCGACAAGCGCATTCTGATGATC GATGGCGAGCCGGTGGACTACTGCCTGGCGCGCATCCCGGCCAGTGGCGAAACCCGTGGCAACCTGGCCGCCGGCGGCCGTGGCGAGGCCCGCCCATTGA CCGACCGCGACCGCTGGATTGCCGCCCAGGTCGGCCCGACCCTGCGCGAAAAGGGCCTGCTGTTCGTGGGCCTGGACGTGATCGGCGACTACCTCACCGA AATCAACGTCACCAGCCCTACCTGCATCCGCGAAATCGACGCTGCCTACAACACCGACATCGGTGGCAAGCTGATGGATGCCATTGATCGCAAGCTGAAG GCGCGCTGACAGCCAACGCGAAGCAAACGCGTAGAGTGGGGTATGATGCCGGTCCTATTCGATTGAGCTGCTGCCCCGCCCTGCGGTTGCTGGATACCTG
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| DNA Sequence for Gene |
>D903_RS0102545
ATGACGCTGCCCGCTGACATCCCCGCCACCCTGCTGCCTCCCCGTGTTCGCCCGGTGGACCGGCTCGGCTTTACCCTGTTCCTGGCTGCCCTGGTGCACC TGGCGCTGATCCTTGGCGTCGGCTTCAGCGTGGTCAAGCCTGCCGAAATCCGCCACACCATGGACATCACCCTGGCCACCTTCAAGAGCGAGAAACCGCC CGAGAAGGCCGATTTCCAGGCCCAGGACAACCAGCAGGGCAGCGGCACCCTGGACAAGAAAGCGGTGCCTACAACCACTGAATTGGCGCCGTTCCAGGAC AGCAAGATCAACAAGATCACCCCACCGCCTGCCGCCAAGCCCGAGGTGGTGCCGCCCCCTACCCCACAAAAGTCGGCGGTGGTGACCACGGCGCCCAAGC CGCAGAAGCTCGAGCCCAAACCCAAGGAAAGCAAGCCACAGCCCAAGCCGGCGGCGCCAGCGCCAGACTTCGACAGCTCGCAGCTGTCCAGCCAGATCGC CAGCCTGGAGGCGGAGCTGTCCAACGAACAGCAGATGTACGCCAAGCGGCCGAAGATTCACCGCCTGAATGCTGCATCGACCATGCGCGACAAGGGTGCC TGGTACAAGGAAGAGTGGCGCAAGAAGGTCGAGCGGGTGGGCAACCTGAACTACCCCGACGAAGCGCGCCGGCAACAGATTTACGGCAATTTGCGGATGA TGGTGTCGATCAACCGCGATGGTTCGTTGTATGAGGTGCTGGTGCTGGAATCGTCCGGGCAGCCGGTGCTGGACCAGGCGGCACAACGTATTGTGCGACT GGCGGCGCCTTTTGCGCCGTTTACCGGGGATCTGGCCGAATTTGACCGGCTGGAGATCATTCGTACCTGGCGTTTTGCGCGAGGGGACCGTTTGTCCAGT AACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTCGGGCCTCGGTATAGGGCTTGCTATATGCGGCGGCGCTCGATTTCACAGGCACCAAAACCCTCAAGACAGTCGCCAACCAAACGACACAAATCCGCA CCTTGTCAGCCCCGCCACCTGGCGCCACACTATCCCTCATGAAAACCCTCGCCCCGAGCTACCTCAAGCATCAGTTCCTGATCGCCATGCCACACATGGC CGATCCGAACTTCGCCCAGACCCTCACCTACATCGTCGAGCACAACGAGCATGGCGCCATGGGCCTGGTGGTCAACCGGCCGCAGGAGCTGAGCCTGGCC GACATCCTCGAGCAGCTGCGCCCGGATGAAACACCACCGGCCAGCACCTTGCAGGTGCCGATCTACCAGGGTGGCCCGGTGCAGACCGACCGCGGCTTCG TGTTGCACAGCAGCGAGTGCAGCTTCCAGGCCACCGTGGCACTGGAAGGGCTGGCGCTGACCACGTCGCAGGACATCTTGCTGGCCATCGCTGCCGGGGT
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| Amino Acid Sequence |
>cell envelope biogenesis protein TonB
MTLPADIPATLLPPRVRPVDRLGFTLFLAALVHLALILGVGFSVVKPAEIRHTMDITLATFKSEKPPEKADFQAQDNQQGSGTLDKKAVPTTTELAPFQD SKINKITPPPAAKPEVVPPPTPQKSAVVTTAPKPQKLEPKPKESKPQPKPAAPAPDFDSSQLSSQIASLEAELSNEQQMYAKRPKIHRLNAASTMRDKGA WYKEEWRKKVERVGNLNYPDEARRQQIYGNLRMMVSINRDGSLYEVLVLESSGQPVLDQAAQRIVRLAAPFAPFTGDLAEFDRLEIIRTWRFARGDRLSS N
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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