Pseudomonas sp. LAIL14HWK12:I12, D902_RS0122590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCAGATCGGCCTGAAGCTGGATATCCGCGTGATGGAGTGGGCCGAAATGCTGCGCCGCGCCAAAAAGGGCGAAGCCGACCTGGTGTCCACCGGCTGG GCCGGCGACAACGGCGACCCCGATAACTTCCTCACCCCGCTGCTGAGCTGCGAAGCGGCGAAGAACGGCGAAAACTACGCCCGCTGGTGCAACCCGAAAT TCCAGGAGCTGATCACCCGCGCCCGCGAAGTGATCAACGACGACGAACGTGCAAGGCTCTATAGCGAGGCATTGAAGGTGTACGATGACGACCAACCCTG GATCAGTATGGCCCACCCCAAGGTGTTCGTGGCCATGCGTGACAACGTGGAGGGCTACGTGATCAGCCCTCTGACCAAAAATAACTTCGCCACCACCAAG GTGAAGTAGAACAACTACGACCGCCGGCAACCCACACGGGGACCGGCGGCACTGCCGTGGCGTGCTACTGGCCGCACGGTCTGAAGAGGTAACCCCGACA
|
|
| DNA Sequence for Gene |
>D902_RS0122590
ATGTTGAGCTTTATTGCCCGGCGCCTGGGCCTGCTGATACCGACCTTTTTCGGCATCACCTTGCTGACCTTCGCGCTCATACGCCTGATCCCCGGCGACC CGGTGGAAGTCATGATGGGCGAGCGCAGGGTCGACCCCGAAATGCATGCCCAGGCCATGGAACGCCTGGGCCTGAACAAACCACTGCCGGTCCAGTACCT GGACTACGTGGGCAAGCTCGCCCAAGGTGACCTGGGTGAATCGCTGCGTACCCGCGAAAGCGTGTGGAGCGAGTTTCTCACCTTATTCCCGGCCACCCTG GAACTGGCCTTCGCCGCCCTGCTGTTCGCCGGCATCGTCGGCCTGCTGGCCGGGGTGATCGCCGCGCTCAAGCGCGGTTCGCTGTTCGACCATGGGGTGA TGGGTATTTCCCTGGCCGGCTACTCGATGCCGATCTTCTGGTGGGGCCTGATCCTGATCATGTTCTTCTCGGTGAGCCTGGGCTGGACCCCGGTGTCCGG GCGCATCGACCTGCTCTACGACATCGAGCCCAAAACCGGCTTCATGCTGATCGACACGCTGCTCAGTGATGAGGAAGGCGCGTTCAAGGACGCGGTGATG CACCTGATATTGCCGGCCATCGTGCTCGGCACCATCCCGTTGGCGGTCATCGCCCGCATGACCCGCTCGTCGATGCTCGAAGTATTGCGCGAAGACTACA TCCGCACCGCCCGCGCCAAAGGCCTGTCGCCAGCGCGCGTGGTGTTCGTGCATGGCTTGCGCAATGCCTTGATCCCGGTGCTGACCGTGTTCGGCCTGCA GGTTGGCACATTGCTGGCCGGTGCGGTGCTGACCGAAACAATCTTTTCCTGGCCGGGCATCGGCAAATGGCTGATCGAAGCCATCGGCGCCCGTGACTAC CCCGTGGTCCAGAACGGCATCCTGTTGATCGCCTGCCTGGTGATCCTGGTCAACTTCGTCGTGGACATTCTCTACGGCCTGGCCAACCCACGCATCCGTC ATCAGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCCCTTGCCATGACTAGCCCGATTCCCAAACCCGTGTCGCCGGCCAGCCCGGTGGACCAGAGCCTGCTCTACCCCTCGCCCTACAAAGAGTTCTGGCAA GCCTTCGCGCGCAACAAAGGCGCTGTAATGGGCCTGGCCTTCATGTGCCTGGTGGTGTTCTGTGCGCTGTTTGCACCGTGGGTCGCCCCGCATGACCCCA GCGAGCAGTACCGCGACTTCCTGCTGACACCGCCCGTGTGGCTGGAGGGCGGCACCTGGCAATTCATCCTCGGCACTGACGAGCTGGGCCGCGACCTGCT TTCACGCTTGATCCAGGGCGCGCGGCTGTCGCTGCTGATCGGCCTGTCGTCTGTGGTGATATCGCTGATCCCGGGCATCCTGCTGGGCCTGCTGGCCGGC TTTTTCCCGCAATTGCTCGGCCCATCGATCATGCGTCTGATGGACGTGATGCTGGCCCTGCCCTCGCTGCTGCTGGCGGTGGCCATCGTTGCCATCCTCG
|
|
| Amino Acid Sequence |
>peptide ABC transporter permease
MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLPVQYLDYVGKLAQGDLGESLRTRESVWSEFLTLFPATL ELAFAALLFAGIVGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTGFMLIDTLLSDEEGAFKDAVM HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGLANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|