Pseudomonas sp. LAIL14HWK12:I12, D902_RS0119885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGTTGCATGACATGTCACAGCTCAGCAACGCCCTGTCTGCCGAATCCGCCCCACCCGCGCGCCAGCAGGCCCCCGACGCGCCGGTGGTAAAAAGCCTT GATGGCCAGCAGATCAAGTTGCCCGGCTACATCGTGCCCCTGGAGGTCAGCGAGGAAGGCCGCACCACCGAATTCCTGCTGGTGCCTTACTACGGCGCGT GCATCCATGTGCCCCCACCACCGTCTAACCAGATCGTGCATATTTTCAGCGAAATGGGCGTGCGCATCGAAGACCTCTACCAGCCCTACTGGATCGAGGG AAAGATGCAGGTTAGAGCCTCCAGCAGCGAACTGGCCGATGCCGGTTACCAGATGGAGGCCGAGAAAATCTACGCATATGAGCTGAGATGAGAACTGTTT CGAATTCATGAAGACGCTTCTTTGAGCTGGGTCAAACTTTCTGTTTAACCAGCTCCGTACCATTGGACTACTCGATTAATAACGTCCTTTGGGAGCTTCC
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| DNA Sequence for Gene |
>D902_RS0119885
ATGAACAAGTCCTTGCTCGGCGCCTCGCTTGTGGCCCTTGCGCTCGCCGCCCCTGCCGCCCACGCCTACCAGGCAGGGGACATGATTTTGCGCGCAGGCG CCATTACCACTGCCCCGAACGAGAGCAGCGGCGACCTGAAGTTCGACGGCAACAAGGTGTCGGGCACCAAGGCGACCCTGGACAGCGATACCCAGCTGGG CCTGACCTTTGCCTACATGCTCACCGACCACATCGGCCTGGAGCTGCTGGCAGCCACCCCGTTCAAGCACACCGTGGGCGTAAAAGGCCTGGGCGGCGGG CTGGACGGCAAGCTGGCAGACATCAAGCAACTGCCACCGACCCTGTCGCTGCAGTACTACCCAATGGAGCCGAACTCGCGCTTCCAGCCGTACGCCGGCG TGGGCATCAACTACACCCTGTTCTTTGACGAAGACTTGAGCAGCGCACGCAAGCAACAAGGCTTCAGCAACCTCAAGCTGCAAGACTCGGTCGGTATTGC CGGCCAGCTGGGCATGGACTACATGCTCACCGACAACCTGCTGGTCAACGCCTCGGTCTGGTATGTCGACATCGACACCAAGGCCAGCGTCAACGGCCCG ACCGCACTGGGCTACAGCAAGACCAAGGTCGACGTAGACGTCGACCCGTGGGTGTACATGGTCGGCCTTGGCTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGAACACGGCAGGGCGGCTTCGGCCGCCCTTTCTCGTTGCAGCCACAGCCAGTACCCCAGCGCGACCGCACTGATGGCCATGCCAAGCCCACACACCG CAGGCCACCCCCATCTGGCATACACGCCGCTCGCCAGCACCGCACCCAAGCCGCTACCGACCGAGTAGCAGCACATATAAGCACCAATCAATCGGCTAGC CATCGCACCACGCCCTGCCAGCAACACGCTCTGGTTGGTGACATGCACTGCCTGCACGGCGAAGTCCAGCATCAACACACCTAGCACGAAGACCATCAGC GACTGCCCGACAAAGGCGGTGGGCAACCACGACAGCGTCAGCAACGCCAGCGCCAGCCCGGTGGTGCGCGCTCCCAGCCCCAGGTCGGCCAAGCGTCCAG CGCGCGCTGCCGCCAACGTACCCGCCACGCCTGCCAGACCGAACAGGCCAATCTCGGTATGGCTCAACGCCAATGGCGCAGCGCTGAGAGGCATGACCAT
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| Amino Acid Sequence |
>outer membrane protein W
MNKSLLGASLVALALAAPAAHAYQAGDMILRAGAITTAPNESSGDLKFDGNKVSGTKATLDSDTQLGLTFAYMLTDHIGLELLAATPFKHTVGVKGLGGG LDGKLADIKQLPPTLSLQYYPMEPNSRFQPYAGVGINYTLFFDEDLSSARKQQGFSNLKLQDSVGIAGQLGMDYMLTDNLLVNASVWYVDIDTKASVNGP TALGYSKTKVDVDVDPWVYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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