Pseudomonas sp. LAIL14HWK12:I12, D902_RS0119660
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTTGCTGCATCAGGAGGCGCAGGGGCAACGTGTCGAACTGGAGCCCAGGGCGCGTCAGGCGCTGCTGGACTTTGCCTGGCCGGGTAATGTGCGGCAGAT GCGCAACGTGCTGCGTACCTTGGTGGCGCTTTGCGAGAACGCCCGAATCGAGTTCTCGGATCTCCCCGCTATTGTTCGCGAGGGCTTCGCCCTCGATCGC CGGCAAGCCAGCTCCCACAGGTACTGCACCAAGCCTGAGGCGCGTGCAAACCCTGTGGGATCTGGCTTGCCGGCGATAGGGCCAGTTGTGTTGGAGGATG CCGAGCGCCAAGCGCTGATGGCGACCCTGGAGGCAAAACACTGGCACTTGACCCGTGTCGCCGAGCATCTGGGCATCAGCCGTAATACCTTGTATCGAAA ACTGCGCAAACACGGCATTGCGAGGGCCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACC
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| DNA Sequence for Gene |
>D902_RS0119660
ATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGCTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCATCGCGTCACCGGCTCGGACGCCAACG TCTATCCCCCGATGAGCACTCAGCTCGAAGCCCAGGGCATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGACCCGGCACCCGACCTGGTGGTCAT CGGCAACGCCATGTCACGCGGCAACCCGGCAGTGGAATACGTGCTGAACAAGGGCCTGCCCTATGTTTCCGGCCCGCAGTGGCTGGCCGACCATGTGCTG CAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCT TCCTGATTGGCGGTGTGCCGCAGAATTTCTCGGTATCGGCCCGCCTGGGCGACACGCCGTTCTTCGTCGTCGAAGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCTCGAAGTTCGTGCATTACCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGACCACGCGGACATCTTCCCGGACCTGGCCTCGATC GAGCGGCAGTTCCACCACCTGGTACGCACCATCCCGAGCGAAGGCCTGGTGATTCACCCTACCACCGAGCAAGCGCTGGAGCGGGTGATCGGCATGGGCT GCTGGACCCCGGTGCAGACCACAGGCGTGGGTGGCCAGTGGCAGGCGCGCCTGCTCAGCCCCGACGGCTCGCGTTTCGAAGTCTTGTTCGAAGGCGAAGC GCAAGGCGTGGTGGACTGGGCACTGACGGGCCAGCACAACGTTGCCAACGCGCTGGCCACCCTGGCCGCCGCCCGCCATGTCGGCGTGGCCCCGGCCATG GGCATCGAAGGCCTCAGCGCGTTCAAGAGCGTAAAACGGCGCATGGAAAAGGTGGCCGAAGTGCAGGGCGTGACCATCTACGATGATTTCGCCCACCACC CGACTGCCATCGCCACTACCCTCGATGGCCTGCGCAAGCGTGTTGGCGAGGCCCCGGTGATTGCCGTGATCGAACCACGCTCCAACTCGATGAAGCTGGG CGCCCACCGTGACGGTTTGCCAGAGAGCGTCAACGACGCCGACCAGGTCATCTGGTACGCCCCGGCCAACCTCGGCTGGGACCTGGCGGCCACCGCCGCG CAGTGCAAGGTCCCGAGTGTGGTAGCCGACAGCCTTGACGCGATCATCGAGCGGGTCAAGGGCCAGGCCCGCCCGGGCACTCATGTGGTGATCATGAGCA ACGGCGGCTTTGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGCGCCCAGTATGGCCTGCGCCTGCTCGATTGCCTGGTGCGCGAAGACCGCGAAGTGCA CTTCCTGATCTCCAAGGCCGCGCAACTGGTAATGGCCACCGAGACCGACGTGCTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTTACCGAATAC ACCGGCGCCGCCGACGGGCAGATCCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCCGGCTCCGGTGCCCCGGCGGCGATGGTGGTAGTGC CTTGTTCCACCGGCACCTTGTCGGCCATTGCCACCGGTGCCTGCAACAACCTGATCGAACGCGCTGCCGACGTTACCCTCAAGGAGCGTCGGCAACTGAT CCTGGTGCCACGCGAAGCGCCGTTTTCCACCATCCACCTGGAAAACATGCTCAAGCTGTCGCAGATGGGCGCGGTGATCCTACCGGCGGCACCGGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVVEADEYDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASI ERQFHHLVRTIPSEGLVIHPTTEQALERVIGMGCWTPVQTTGVGGQWQARLLSPDGSRFEVLFEGEAQGVVDWALTGQHNVANALATLAAARHVGVAPAM GIEGLSAFKSVKRRMEKVAEVQGVTIYDDFAHHPTAIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDLAATAA QCKVPSVVADSLDAIIERVKGQARPGTHVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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