Pseudomonas sp. LAIL14HWK12:I12, D902_RS0108615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAATCAGGCTGGCCTGTTCCTGCCAACGCGCCACCAGCACCAGGTACACCTGCACAGTCAGACCGAACCAGCCCAGTACAGCCATACCGGTCAGCCAAG GACGCTGTGGCATGTCAGGCCTGTCGCTGCATTTTCACATACAGCTGCTCGACCTTTTCCCGCGCCCACGGTGTCTTGCGCAAGAAGGTCAGGCTCGACT TGATGGTCGGGTTGCTCTTGAAGCAGCGCACATCGATGCGTTCGGCCAGGCCCTGCCATTGGTAGTGCGCCACCAGCTCGGTAAGGATCTGCTCAAGGGT CTTGCCGTGTAGCGCGTTGTGTTGGGCCGTGCTCATGCTGTGCTCCGTAGGAAAGATGCGCACCTTACACGAGTGTAGTGGTGGGTGGGATCAGTCGACT CGACAGAAAAACCGCTGGCAATGGGCAAAACCTCTGTGCTGAAATAGATATGTTATGTTGTAACATTACAAAAGCCTCTGCCAAGGAACGCCCCATCCCC
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| DNA Sequence for Gene |
>D902_RS0108615
ATGCTGTACACACCGCTTCGCCTCTCCCCACTTGCCGTCGCGCTCTGGCTGGCGGCATCGCCCAGCCAGGCCGTGGAACTCGAACCCCAGGTCATCACCG CCAACCCGCTGGGCAATCGCCAGCTGGCCGCTCCCAGCACCGTGCTTGAAGGCGACAACCTGTTGCAGCAACAGCACGGCAGCCTCGGTGAAACCCTGAA CAAACAGCCTGGTGTCGCCTCCACCTGGTTCGGACCGGGTGCCAGCCGCCCGGTGATTCGTGGCCTGGACGGCGACCGCATTCGTATCCTGCGCAATGGC GTCGGCGCGCTGGATGCCTCGTCGCTGTCCTACGACCATGCCGTACCGCTGGACCCGGTCACCGTCGACCGCGTCGAGATCGTCCGTGGCCCTGCCGCCC TGCTGTACGGCGGTAACGCCATCGGCGGTGTGGTCAACACCTTCGACAACCGCATCCCGGATGCGCCCATCGAGGGCATTCACGGTGCCGGTGAGCTGCG CTACGGCGGCGCCGACACCACCCGCAGCAGCGCCGGCAAGCTGGAGGCCGGTAACGGTGCCTTTGCCCTGCACCTGGATGCCAACAGTCGCCAGTTCAAC GACCTGCGCATCCCCGGCTACGCCCGCAGCTCCAAGGTACGTGACGCTGACGAGCCCGGCAGCAAGCACCGCCTGGAAAACAGCGACGGTCGCCAGGATG GCGGTGCGGTCGGTGGCGCGTACCATTGGGATCACGGCTATGCTGGCCTGTCCTACAGCGGCTATGACAGCAACTACGGCTCGGTGGCCGAATCTGGCGT GCGCCTGGACATGAAGCAGGACCACTACGCCTTCGCCTCCGAACTACGCGACCTCGACGGCCTGTTCAGCTCGGTCAAGGTCGATGCCGGCTACACCGAC TACAAACACAGGGAGATTGAAGAAGGCGAGGTGCACACCACCTTCAAGAACAAAGGCTACGAAGCGCGCATCGAAGCCCGCCACCAACCGCTCGGGCCGG TGGAAGGGGTGATTGGCGCCCAGGTCAGCCGCAACGAGTTCTCTGCCCTGGGCGAAGAAGCCTTTGTACCGCACACCGATACCGACAGCCTGGCGCTGTT CATGCTCGAACAGTGGCAGGCCACCGAGCGCCTGAACCTGAGCCTGGGTGCACGCATGGAGCATACCCGGGTAGACCCCGACGCCAAAGGCAACGAAAAC TTCGTCGATGCCGACAGCGCGAGCAGCTTCAACGCCTTCAGCCTGTCGTCAGGTGCGGTGTACCAGCTTGACCCGATCTGGTCGCTGGCCGCCAACCTCG GCTACACCGAACGCGCTCCGACGTTCTACGAGCTGTATGCCAATGGCGCACATGTGGCCACTGGCGCCTTTGAAGTCGGCGATGCAAGCCTGAACAAGGA AAAGGCCATTTCTGCCGACTTGGCACTACGCTTCGACAATGGCACGCACAAGGGCAGTTTCGGGGTGTTCTACAGCCACTTCCGCAACTACATCGGATTG ATCGGCACCGGCAACACCCGCGAAGGTGGGCATGACCACGACCACGACGAGGATGCCCACGACCACGATCATGACCACGATGGCTTCCCGGAGTACCAGT ACCAGGGTGTGCGTGCGCGCTTCTATGGCATCGAAGCCCAGGACCGCTGGCAACTGGCCGAGAACCGTTACGGCAGCTTCGCGCTGGAACTCTCCGGCGA CTACACCCGAGCCAAGAACCTCGACAGTGGCGAGCCGCTGCCACGCATCGCCCCGCTGCGCCTGAACAGCGGGCTGGTCTGGGAACTGGACCGCTGGCAG GCACGGGTCGATGTGCAACACGCGGCATCGCAACACCGCAAGCCGGCCAACGAAACCAGCACCGAGGGCTACACCACACTGGGGGCAAGCGTTGGATACC GCTTCGAGGTTGGCCAGAGCCAGTGGCTGGCGTTTGTGCGCGGTGAAAACCTGACCGACCAGACTGTGCGTTATGCCAGCTCTATTCTGCGCGATATTGC CCCGGCCCCCGGGCGCAGTGTGGAAGTCGGCCTGCGTACTACCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGCGGGGGCGCTTTGCGCCCCCTACAGGCCATTGTTACCAGACAAACAATAATGCCCTGCGACATTTTGTCTTTTTTTCTTACAGCTTCCCCTATAT CCTCCTCGCCCCAAGCTGAAACGCTTCATCGAAACCCTCTTGTCGCCATATCCATTGAAGGGCCCGCCCTTTGATGCGCTTGCCGTTTTTTCAATAATCA AAAGATAGCGCTATCTCATGTTTCAACTGCCCAAACCCTGTTACATCGGCCTTGCCCTCAGTGCCTTGGCGACCCACGCCAGCGCCAGCGAAATGTTCGC CAACGACTCCCCCTGGATGCTCGGCGACTGGGGCGGCACCCGCAGCGAATTGCTGGAAAAAGGCTACGACTTCACCCTCGGCTACACCGGCGAGATGGGC AGCAACCTGCACGGCGGCTACGACCACGACCGCACGGCGCGCTACAGCGACCAGTTCACCTTTGGCAGCCACCTCGACCTGGAAAAGATCCTGGGCTGGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MLYTPLRLSPLAVALWLAASPSQAVELEPQVITANPLGNRQLAAPSTVLEGDNLLQQQHGSLGETLNKQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPVTVDRVEIVRGPAALLYGGNAIGGVVNTFDNRIPDAPIEGIHGAGELRYGGADTTRSSAGKLEAGNGAFALHLDANSRQFN DLRIPGYARSSKVRDADEPGSKHRLENSDGRQDGGAVGGAYHWDHGYAGLSYSGYDSNYGSVAESGVRLDMKQDHYAFASELRDLDGLFSSVKVDAGYTD YKHREIEEGEVHTTFKNKGYEARIEARHQPLGPVEGVIGAQVSRNEFSALGEEAFVPHTDTDSLALFMLEQWQATERLNLSLGARMEHTRVDPDAKGNEN FVDADSASSFNAFSLSSGAVYQLDPIWSLAANLGYTERAPTFYELYANGAHVATGAFEVGDASLNKEKAISADLALRFDNGTHKGSFGVFYSHFRNYIGL IGTGNTREGGHDHDHDEDAHDHDHDHDGFPEYQYQGVRARFYGIEAQDRWQLAENRYGSFALELSGDYTRAKNLDSGEPLPRIAPLRLNSGLVWELDRWQ ARVDVQHAASQHRKPANETSTEGYTTLGASVGYRFEVGQSQWLAFVRGENLTDQTVRYASSILRDIAPAPGRSVEVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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