Pseudomonas sp. LAIL14HWK12:I12, D902_RS0108285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCCGGCGACAACACCGCCTCGGTACAGCTGGTGCTGGAAGACGGCAGCCTGTTCAAGCAGGAAGGTCGTCTGGAGTTCTCCGAAGTCGCGGTTGACGA GACCACCGGCTCGGTCACCCTGCGCGCCATCTTCCCCAACCCCGACCACACCTTGCTGCCTGGCATGTTCGTGCATGCGCGGCTGAAGGCCGGTGTCAAC GCCAACGCCATCCTGGCGCCGCAACAGGGCGTGACCCGCGACCTCAAAGGCGCGCCGACCGCGCTGGTGGTCAACCAGGAGAACAAGGTCGAGCTGCGCC AGCTCAAGGCCAACCGTACCCTGGGCAGCGACTGGCTGATCGAGGAAGGCCTCAACCCGGGTGACCGCCTGATCACCGAAGGGCTGCAGTACGTGCGCCC GGGCGTCGAAGTGAAGGTCAGCGAAGCCACCAACGTCAAGAAGCCGGCCAGCCCTGATCAGGCCAACGCGGCGAAAGCAGACGCCAAAGCGGAGTAAACC
|
|
| DNA Sequence for Gene |
>D902_RS0108285
ATGTCGAAGTTCTTTATCGATCGCCCGATCTTCGCCTGGGTGATCGCCTTGGTGATCATGCTGGTCGGCGCCTTGTCGATCCTGAAGTTGCCGATCAACC AGTACCCCAGCATCGCGCCGCCGGCCATCGCCATCGCCGTGACCTACCCGGGCGCCTCGGCGCAAACCGTGCAGGACACCGTGGTACAGGTGATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCTACCTTCGAACAAGGCACCAACGCC GACACTGCGCAGGTGCAAGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAGCAAGGTATCCGCGTTACCAAGGCCGTTA AAAACTTCCTGCTGGTGATCGGCCTGGTGTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTACATCGTCTCCAACATGCAGGACCCGATCTC GCGTACTGCGGGCGTGGGTGACTTCCAGGTGTTCGGTGCCCAGTACGCCATGCGTATCTGGCTCGATCCGGCCAAGCTGAACAAGTTCCAGCTGACCCCG GTCGACGTCAAGACCGCCGTGGCCGCGCAGAACGTGCAGGTGTCTTCCGGTCAGCTCGGCGGCCTGCCAGCGTTGCCGGGTACCCAGCTGAACGCCACCA TCATCGGCAAGACCCGTCTGCAGACTGCCGAGCAGTTCGAAAAGATCCTGCTCAAGGTCAACAGCGATGGTTCGCAGGTGCGTCTGGGTGATGTCGCCCA GGTAGGCCTGGGCGGCGAAAACTACGCGGTCAGCGCCCAGTTCAACGGCAAGCCGGCTTCCGGCCTGGCGGTAAAACTGGCAACCGGCGCCAACGCCCTG GACACCGCCAAGGCGCTGCGCCAGACCATCGCCGACCTGGAACCGTTCTTCCCGCCGGGGGTGAAAGCCGTATTCCCGTATGACACCACCCCGGTGGTCA CCGAATCGATCAGCGGCGTGATCCACACCCTGATCGAAGCCGTGGTCCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACCATGACCGTTCCGGTGGTGTTGCTGGGTACCTTCGGCATCCTGGCCGCTGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTCCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTAATGTCCGAGGAAGGCCTGCCGCCCAAGGAAGCGACCAAGCGCT CGATGGAGCAGATCCAGGGTGCCCTGGTGGGTATTGCCCTGGTGCTGTCGGCGGTACTGCTGCCCATGGCGTTCTTCGGTGGTTCCACGGGGGTGATCTA CCGGCAGTTCTCCATCACCATCGTCTCGGCCATGGGCCTGTCGGTGCTGGTGGCGCTTATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGCCGCTG AAGAAGGGCGAGCACCATGTGGCCAAGCGTGGCTTCTTTGGCTGGTTCAACCGCAACTTCGACCGCAGCGTAACCGGCTACGAACGCAGCGTTGGTACCA TCCTGCGCAACAAGGTGCCGTTCCTGCTGGCCTATGCACTGATCGTGGTTGGCATGATCTGGCTGTTCGCCCGTATTCCTACCGCCTTCCTGCCTGAGGA AGACCAAGGCGTATTGTTCGCCCAGGTACAGACCCCGGCCGGTTCCAGTGCCGAGCGTACCCAGGTGGTGGTCGACCAGATGCGTGAGTACCTGCTGAAG GAAGAAGCCGACACCGTATCCTCCGTGTTCACCGTCAACGGCTTCAACTTCGCCGGTCGCGGCCAGAGCTCGGGCATGGCGTTCATCATGCTCAAGCCTT GGGACGAGCGCTCCAAGGAGAACAGCGTGTTCGCCCTGGCCCAACGTGCCCAACAGCACTTCTTCACCTTCCGCGATGCAATGGTGTTCGCCTTCGCCCC GCCAGCAGTACTGGAGTTGGGTAACGCCACCGGCTTCGACGTGTTCCTGCAGGACCGCGGCGGTGTCGGCCACGAGAAGCTGATGGAAGCGCGCAACCAG TTCCTGGCCAAGGCTGCACAAAGCAAGATCCTCAGTGCTGTGCGCCCTAACGGCCTGAACGACGAGCCGCAGTACCAACTGACCATCGATGACGAACGTG CCAGCGCCCTGGGCGTGACCATCGCCGACATCAACAACACCCTGTCGATTGCCTTGGGTGCCAGCTACGTCAACGATTTCATCGACCGTGGCCGGGTCAA GAAGGTGTACATCCAGGGCGAACCAAACGCCCGGATGAGCCCGGAAGACCTGCAGAAGTGGTACGTGCGCAATGGCGCTGGCGAGATGGTGCCGTTCTCC TCCTTCGCCAAGGGCGAGTGGACCTACGGTTCGCCGAAGCTGTCGCGCTACAACGGTGTCGAGGCGATGGAAATCCTGGGTGCGCCAGCGCCGGGCTACA GTACCGGTGAAGCCATGGCCGAGGTCGAGCGCATTGCTGGCGAACTGCCAAGCGGCATTGGCTTCTCCTGGACCGGCATGTCCTACGAGGAAAAACTCTC CGGCTCGCAAATGCCGGCGCTGTTCGCCCTCTCGGTACTGTTCGTGTTCCTGTGTCTGGCCGCCCTGTACGAAAGCTGGTCGATCCCGATCGCCGTAGTG CTGGTAGTACCGCTGGGTATCATCGGTGCCCTGATCGCCACCAGCCTGCGCGGCTTGTCCAACGACGTGTACTTCCTGGTCGGCCTGTTGACCACCATCG GCCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCACGAGCAAGGCCGCAGCCTGTACGACGCGGCGATCGAAGCGTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCGCTGGCGTTCATCCTCGGCGTGGTACCGTTGACCATCGCCAGTGGCGCCGGTGCCGGCAGCCAGCACGCCATT GGTACCGGCGTGATCGGTGGCATGATCAGTGCGACCGTGCTGGCTATCTTCTGGGTACCGCTATTCTTCGTCGCAGTGTCGTCGCTGTTCGGCAGCAAAG AGCCGGAAAAAGACGTCACCCCTGAAACTCCACGTTATGAGGCTGGGCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCAAGTCTTTGTTGTCCCTGGCGGTAACCGCTTTCATTCTTGGCGGCTGCTCGCTGATTCCCGACTACCAGACCCCGGAATCGCCGGTGGCAGCGCAGTG GCCGCAAGGCCCTGCGTACTCGCCGACCCAGTCGGCAGACGTTGCCGCCGCCGAACAGGGCTGGCGCCAGTTCTTCCACGACCCGGCACTGCAGCAGCTG ATCCAGACCTCGCTGGTCAACAACCGCGACTTGCGCGTCGCCGCGTTGAACATCGACGCCTACCGCGCGCAATACCGCATCCAGCGTGCCGACCTGTTCC CGGCGGTTTCGGCCACCGGCAGCGGCAGCCGCCAGCGCGTGCCGGCAAACATGTCGCAGACCGGTGAATCGGGCATCACCAGCCAGTACTCGGCCACCTT GGGCGTCAGTGCCTATGAGCTGGACCTGTTCGGCCGTGTGCGCAGCCTCACCGAGCAGGCGTTGGAAACCTACCTGTCCAGCGAGCAGGCGCGCCGCTCC
|
|
| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNA DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNKFQLTP VDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRLQTAEQFEKILLKVNSDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL DTAKALRQTIADLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVL AIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPL KKGEHHVAKRGFFGWFNRNFDRSVTGYERSVGTILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK EEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQ FLAKAAQSKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPNARMSPEDLQKWYVRNGAGEMVPFS SFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAVV LVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAI GTGVIGGMISATVLAIFWVPLFFVAVSSLFGSKEPEKDVTPETPRYEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|