Pseudomonas sp. LAIL14HWK12:I12, D902_RS0106600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGGGTGAAACAGCTGCGAGAGCACCACGGTACCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCGGTGGCCATCA GCACATGCGAGGTGTAACGGGCGCTGTCATGCACCCCGGCAACTTGCAGCACGATCAGGCCTACGCCCCCCGCGGCGCGGTCACGCTGGTAGGCGATCAG TTTGTCATTCACCAGATTGTCGGTAGGCAGGCAGGTGTCGTGGCCGGTGGACATGATGCGGTTCTTCAGGCGTTTGCCGCGTATCTGCAAGGGTTCGAAC AGGTGAGGGAAGGCGGTCTGCATACAGGCGGCTCCGGTGCGGTGTTGTTCTTGTTTTGTTTATGAAAGTGTAGCGCCAGTAAAAAATCAACTTGTTTTTT TACTGGTGCGCGACTAGGTTTTGTTCACCCTCACGGCGAGGGCGTGACCTCACAACAACAAGAAAACGGGCCTTCGCGGCACCGGAAGGAGGAAACTACG
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| DNA Sequence for Gene |
>D902_RS0106600
ATGCAGGTATTCCCATGTGTGAGCGGCCTTTGTACGGCGCTGCTGGCCCTTGGCCTGGGCAGTGCGCAGGCCGCGCCAGAGATGGTCGTGGTCGCTTATG GTGGTGCTGGCCAGAAGGCTCAGGACGAGGCGATCTTCAAGCCGTTCAGTGCGCAGGACGGCAGCAAGTTGATCCAGAGCGAATACAACGGCGAGATGGC GCGGATCCAGGTGATGGCCGACACCGGTAACGTCGACTGGGACGTGGTGCAGATCGAAGGGCCGGACTTGATGCGTGGCTGTGACGAGGGCGTGTACGAG CACCTTGACTGGAAACGCTTGGGCCATGCCGCCGAACTGATCCCTGATGCAGCGCAGGACTGCGGCTCGGCTGCGCTGGTGTGGAGCGTGGCGATCGCTT ACGACCGCAACAAGCTGGCCCAGGCACCGACATCGTGGGCCGACTTCTGGGATGTGAACAAGTACCCGGGCAAGCGCGGCCTGCGCAAGCGTGCGGTGTA CAACCTGGAGTTCGCCCTGCTGGCCGATGGGGTCAAGGTTGAAGATGTCTACCAAGTACTGTCGACTCCGGCCGGGGTTGAACGTGCCTTCGCCAAACTG AGTGAACTCAAGCCCTACATCCAGTGGTGGGACGCGGGCGCCCAGCCAGCGCAGTGGTTGACTGCAGGCGATGTGGTGATGACCTCCACCTACAGCGGCC GCATCGCCGTGGCAGCACAACAGGGCAGCCCGCTGGCCGTCGTGTGGCCCGGTAGCCTGTATGGCATGGATTACTGGGCGATCATAAAAGGCTCGCGGCA TGTGGATCAGGCCAATCGGCTGATTGCCTATGCCAATCAACCGGATACCCAGGTGCGTTATGTGCAGCAGATTCCGTATGGGCCTACCAATACCCAGGCT GCTGCCAGGCTTGACCCGGCCTTGGCCGACTGGGTGCCCACTTCGCCACAGAACCTGCAAGGGGCGCTGGCGATGAATGTGAAATTCTGGGTTGACCATG GCGAAGAGCTGGAACAGCGCTTCAATGCCTGGGCGACCAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCGTGCCATTTCATCAATCAGGGCAATACCATGACCGCAACGGAACAGCACTTGCGCCAGGAGTTGGCGGCTTGTTATCGGCTGATCGCGCACTTTCG CATGAGTGACCTGATCTTCACCCACATTTCCCTGCGCCTGCCGGGGCCGGAGCATCACTTTCTCATCAACCCGTACGGCCTGCTGTTCGATGAAATCACG GCCTCCAGCCTGGTGAAGATCGACCTGCAGGGCAGGCTGGTGGAACCCACGCCGCACTCGGTCAACCCGGCCGGCTTCGTCATTCATAGCGCCATTCATG CCGCCCGCGAGGATGCCCAGTGCGTGCTGCACACGCATACCCGGGCCGGGTGTGCAGTAGCGGCGCTGGAATGTGGGCTGCTGCCGGTGAACCAGATGTC TATGGAGTTTTACGGCAAGGTGGCTTACCACGCTTACGAGGGTATTGCGCTGGACATGGATGAGCAGCAACGGCTGGTGGCCGATCTGGGCGACAAGCCG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MQVFPCVSGLCTALLALGLGSAQAAPEMVVVAYGGAGQKAQDEAIFKPFSAQDGSKLIQSEYNGEMARIQVMADTGNVDWDVVQIEGPDLMRGCDEGVYE HLDWKRLGHAAELIPDAAQDCGSAALVWSVAIAYDRNKLAQAPTSWADFWDVNKYPGKRGLRKRAVYNLEFALLADGVKVEDVYQVLSTPAGVERAFAKL SELKPYIQWWDAGAQPAQWLTAGDVVMTSTYSGRIAVAAQQGSPLAVVWPGSLYGMDYWAIIKGSRHVDQANRLIAYANQPDTQVRYVQQIPYGPTNTQA AARLDPALADWVPTSPQNLQGALAMNVKFWVDHGEELEQRFNAWATK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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