Pseudomonas sp. LAIL14HWK12:I12, D902_RS0103500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGCGGCGGTGAGAAATGGGCAGAACTTGTGGGAGCGGGCATGCCCGTGAAGAATTCCACACCGATCCACCCGACAAAACAGCGCTTCCCTATTGGCT GGTGAATTTTTATACTATCGAGTCCGCCTGCCCATTACTGGGCTGCACGCCCACCGCATTTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCTCGCCAGCTGGCGACCGGCGGCAAAGAGCCACGCGTTGCGTGG GAGAACGACAAGCCAACCGTTGTTGCCCTGCGTGAAATCGCCGAAGGCATTGTCACCAACGAGTTCATCGCCGCTGAAGAGATCGTCACCGAGGATCCGG TGTTCGCCGCGTTCGAGGACGAGAACAACGAGGCTGTCTGATTGATGCCAGGTCGACGTCGCACGGCGCAAGGCCCTCTTCCTCCGCAGGAGGTGAACCC
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| DNA Sequence for Gene |
>D902_RS0103500
ATGCCGGGTATAGAAGCCTTGGCCGAACGGCTGTCGACCTATCTTGGCCCCGAACAGGTCAACCTGGTCCGCCGCGCCTATTTCTACGCCGAACAGGCCC ACGACGGGCAGCGCCGCCGCAGCGGCGAGCCCTACGTGACCCACCCGCTGGCCGTGGCCAGCATCCTCGCCGACATGCACATGGACCATCAAAGCCTGAT GGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCAAGGAAGCCCTCAGCCAGCAATTTGGCGAGACCGTGGCCGAACTGGTCGATGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCGCAGGCCGAAAACTTCCAGAAGATGGCCATGGCCATGGCTCGCGATATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTCGAAATCTACGC CCCCATCGCCAACCGCCTGGGCATGCACACCGTGCGCGTGGAGTTCGAGGACCTGGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCCACCGG GCGGTGAAAAGCGCACGCGGCAACCGTAAAGAGATCGTCGCCAAGATCGAGCACTCGCTGGCCAACTGCCTGGCCGCCGACGGCATCGAGGGCGAGGTCA GCGGCCGGCAGAAACACCTCTATGGCATCTACAAGAAGATGCGCGGCAAGCGCCGTGCCTTCAACGAGATCATGGACGTGTACGCCTTCCGCATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTGCATAACCTGTACAAACCGCTGCCCGGTCGCTTCAAGGACTACATCGCGATCCCCAAAGCC AACGGCTACCAGTCGTTGCACACCACGCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAGTCCAACGACGACGAGCAGCCCAAGGGCAGCCACGCCCGTGCCCGTCAGTGGGTCAAGGGCATCCTTGAACTGCA GCAACGTGCCGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGTCGCATCATGGAG CTGCCCAAAGGCTCCACGGCTGTCGACTTCGCCTACGCGGTGCACACCGACGTGGGCAACAGCTGCATCGCCTGCCGCATCAACCGCCGCCTGGCGCCGC TGTCCGAGCCGCTGCAAAGCGGCTCGACGGTGGAAATCGTCAGCGCACCGGGCGCACGGCCGAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCACGCCCTCAAGCAGCAGCGTCGGTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTTACCGGCTTCGACAGC AGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCGATCCTCGCCGAGTACCGCCTGGAACTCATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTACGTGGTTGCACGTCGCCTGCTGTCGGCCGAAGGCGAGCAGTTGCCGGCGCCGGAAGGCCCGCTGGCGATCCGTGGTACCGAAGGCCTGGT GCTGAGCTACGCCAAGTGCTGTACGCCGATCCCGGGTGACCCGATCGTCGGCCATCTGTCGGCTGGCAAAGGCATGGTCGTGCACCTTGAGAACTGCCGC AACATCAGTGAAATCCGCCACAACCCGGAGAAGTGCGTGCAGCTCTCCTGGGCCAAGGACATCGCGGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGG AGCACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAACATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCGCGTGTGATCAAGAAGCTGCGTACCCTGACCGGTGTGGTCCGCATCACCCGCATG CGTACGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCAGCTGCCATCGGCACCTACTCGCAGGCGATCAAGGCCGGCAA CACCGTGTACATGTCTGGCCAGATCCCGCTGGACCCGAAGACCATGGAGCTGGTCGAAGGCTTCGAAGCTCAGACCGTGCAAGTGTTCGAGAACCTCAAA GCCGTGGCTGAAGCCGCTGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGGTGATGG GCCGCTACTTCGAGCAGCCTTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCGCTGCCGAAAGGCTCCCAGGTCGAAATGGACGCCATCCTGGTCATCGA ATGATGCCCTTGGTGACGGGCACCCCGCCCGTCACCCCTCCCTCTTCTGCAAGGTTATTCCCTCATGCGTCAAGCACTGCCCCTCACACTGGCAGCCCTG
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEHSLANCLAADGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNDDEQPKGSHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS SLEKIPQERIQSILAEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDIAGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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