Pseudomonas sp. LAMO17WK12:I4, D885_RS0120620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTTTTCGGGCTTTTCACGCGTTGGCACAGCCCTTGCTATACCTTGCTCAACGACATTCCGGTCAACCTCTGAAGGTTTCCCCGACATGAGCATCAGCT TCGACAAGGCGCTTGGCATTCACGAAAAGGCACTGGGCTTCCGCGCCCAGCGCGCTGAAGTGCTGGCCAACAACATCGCCAACGCCGACACGCCCAACTA CAAGGCGCGTGACATGGACTTTTCTTCGGTGCTCGCCGCCGAAACCAGCAAGCAGCAAAGCGGCCGCTTCGCCATGGACCGTACCAACAGCCGGCACATC GAAGCCGAAGGCCTCGCCATTGCCGCTGACGATACCCTCAAGTACCGCACACCGCTGCAGCCGTCGATCGACCAGAACACCGTGGACGCGCAGATCGAGC AATCGAACTACACCGAAAACGCCATTGGCTTCCAGGCCAGTTTCACCTTGCTCAACAGTAAATTCAAAGGGCTGGTTTCCGCCCTGCGGGGAGAATGACC
|
|
| DNA Sequence for Gene |
>D885_RS0120620
ATGTCCCTTTCCAGTGTTTTCAACATTGCCGGTAGCGGTATGAGCGCGCAGAACACGCGCCTGAATACCGTTGCGTCCAACATTGCCAACGCCGAGACCG TGTCTTCGAGCATCGACCAGACCTACCGCGCCCGCCATCCGGTGTTCGCTACCACCTTCCAGGACGCACAGGCCGGCAGCAGCCAGTCGCTGTTCGAAGA CCAGGGTGAAGCAGGGCAGGGCGTGCAGGTAAACGGCATCGTCGAAGACCAGAGCACCCTCGAGGCTCGTTACGAGCCAAACCACCCGGCGGCGAACAAG GACGGCTACGTCTACTACCCGAATGTCAATGTGGTCGAGGAGATGGCTGACATGATCTCCGCCAGTCGCGCGTTCCAGACCAACGCCGAGCTGATGAACA CGGCCAAGAACATGATGCAGAAAGTCCTGACCCTGGGGCAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAGGAAGCCGACATGACCACTACCAATTCCACCTCTGACGTCAGCAGTGCGTACCTGACCTCGCTGCAGAAGCAGACGTCGAAGACCGACAGCAGCACCG GCGCTGCAGGCAGTGCACTGGGCAAGGATGCTTTCCTGCAGTTGCTGGTTACCCAGATGAAAAACCAGAACCCGCTCGATCCGCAGGAAAACGGCGAGTT CGTCGCCCAGCTGGCACAGTTCAGCAGTCTCGAGAGCATGCAATCGCTGAATGATTCGGTGACCTATATCGCGGCAGGGCTGCAGTCCTCCCAGGCCCTG CAGGCTTCATCACTGGTCGGGCGCAATGTGATTGTCCAGACCGACAAGGCTGTGGTCGACACCAGCAAGGATATGAAAGGCACGGTCAACCTGACGTCGT CCAGCACCTCAACCTCGGTGGGCATCTACGACAAGGACGACAAGCTGGTACGCACCCTCGACCTGGGTACTCAGAAAGCCGGCAAGATCGACTTTACCTG
|
|
| Amino Acid Sequence |
>flagellar basal body rod protein FlgC
MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQDAQAGSSQSLFEDQGEAGQGVQVNGIVEDQSTLEARYEPNHPAANK DGYVYYPNVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVLTLGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|