Pseudomonas sp. LAMO17WK12:I4, D885_RS0116040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGGCGGCATCGGGCTTTCCGGTGGGCAGCGGCAGCGCCTGGCGATTGCCCGGGCGTTGCTGGTGGATGCGCCGATCCTGTTGCTGGATGAAGCCACC AGCGCCCTCGACGCGCAGAGCGAACACCTGATCCAGCAGGCGTTGCCCAGCCTGATGGCCGGGCGTACCACGCTGGTGATCGCCCATCGCCTGGCCACGG TGCAGCATGCCGAACGTATCGCGGTCATCGACAAGGGGCGGCTGGTGGCGGTGGGCACACACCGTCAGTTGATCGAGGAAAGCCCGCTGTATGCGCGGTT GGCGGCCTTGCAGTTCACCACAGGGTAGGGTGTCGCGGTTTTGTAACATTTTTGTAGCAATTGCCTGAGAGTATCTGCCTCAACTGTTGCGTAAGTGCTC GACCTGGCTGCCATTGCTTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGGGGGCTGCACAGCGGCCCCAGCCCTCTCTCTCTGGTTCCGAGACCCTAG
|
|
| DNA Sequence for Gene |
>D885_RS0116040
ATGTTGCGTAAATCCCTCAGAGTGCAAATTCTCTCGCTGCTCGGCGGCAGCCTGGCGGCGATGTTGCTGATCGCCCTGGTGTGTTTCCAGTTCCTGTCGT CCAGCGTGCGCGGTTATGCCGAGCTGGTCGACGGGCCGCTGCGGGCCTCGCAATTGATCGACGAAGCCAACCTGCAATTCAAGATACAGGTACAGGAATG GAAGAACGTGTTGCTGCGCGGGCGCCAGCCAGCGGACATGGACAAGTACTGGCAGCAGTTCCAGGCCCGTGAACAACAGGTTCAAGAGCTGCTCGGGCAG TTGATCGACAGCAGCGACGCCAGGCTCAAGGCGCCGTTGCAGCAGCTGCGTGACAGCCACCGGCAGTTGGGCCAGGCCTATGCGCAGGGCCGCCAGGCTT TCCTTGCCGCAGGTGGTGACCCGGTAGCCGGCGACCAGGCGGTCAAAGGCGTGGACCGCGCCGCCAGCGAGCAGATGAGCGAACTGGTCGAGCAGCTGCG TGCCGATGCGCGTCAGCGTGCGGCCAGCATCAGCGCCAGCGCCGAGCGCACGGTATGGCTGGGCTTGCTGGTGATGTTGGCTTCGGCGGTGCTGGTGGGG CTGCTCAGCCTGTGGCTGGTCAACCGTAGCCTGATCGAGCCGATCCGCCAACTGATCGAGTATGTCGCACAACTGAGCCAAGGGCGTTTCGCCGCCCGGG TCGATAGCCGCCGTGAAGATGAACTGGGGCGCCTGGCGCGGGCTGCCAACACGCTGCGCGACTTCCTTGCTGATACCGTTGGCCGCCTGCAGGACAACGC GCAGGAGCTGGAAGGCGCCAGTGGCCAGTTGCGTAGCATCGCCGGCGACATGGCCCGTGGCACCCACGACCAGTTCCAGCGTACCGACCAGGTGGCCACG GCCATGCACGAGATGTCCGCCACCGCCCAGGAGGTCGCCCGCCACGCCGCCGAGGCCGCTCGCGCGGCAGATGACGCTGACCACAGCGCCCAGGCCGGCG AGCAGGTGATGCAGCAGACCATCGACATTATCGGTGTGGTCAACCGTGAAATCGCCGGCACGGCGGCGGTAATCCGCGACCTGGAACACGACAGCACGCG CATTGGCAAAGTGCTGGAGGTGATCCGTGGCATCGCTGAGCAGACCAACCTGCTGGCGCTCAACGCAGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGG CGTGGGTTTGCAGTGGTTGCCGATGAGGTGCGCAGCCTGGCCCAGCGCACCGCTGCATCGATTGCCGAGATTCACCAGATCATCGAAGCCGTGCAGTCGG GGGCGGTAGAGGCGGTCAAGGCGATCGAAAGCGGCCAGCAGCGCAGCGAGGAGGGGGCCGAGCAGGTGCAGCAGGCCGGGCAGATGTTGCAGCGCATCAC CCAGTCCGTAGAGGCGATCCGTGACATGAACCGACAAATCGCCACGGCGGCCGAAGAGCAGACCAGTGTGGCGGAGGACATTTCGCGCAACCTGATCGAA ATCACCCGTATCGCCACGGCCAACCAGCAGGCAGTGCAGCATACCGAGCAGGCTGGGCAGCGCTTGCACGGGTTGTCGGGGCAGTTGGGTGAGGTGACCT CGCGCCTGACGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGTTTTCAGGCACAACAAAAAGCCCGCACAAGGCGGGCTTTTCGAGCAGGATCTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAAC GAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCACACAAGCCCTTGTTGTTCAAAGGGGCTTTGCAAAAC GGGCGCCTGGATCAGAGCTCTTTGACGGTGCGGATCTGGTCCTTGTTCAGGCGGGTGCGCTTGCCATCCAGTTGCTCGAATTCGTAGAAGCCGGAGTCTT CATCGTAGTTCGGGGTGTCCGTGGCCTGGATTTCGCGGCCATCGTTCAGGGTAATGACGGTCGGCGAAGCGCAGCCGGCAAGGGCGCCCAGGCCCAGGGC GAGCAGGAAGGCGGGTAGGGTCCGTTGAATCATCGTGTTTCTCCAGTGCGATGGTGCTAGATGTCAGTTAAGACGCAGGGTGTCCATGCAAGTTCCTTCT
|
|
| Amino Acid Sequence |
>chemotaxis protein
MLRKSLRVQILSLLGGSLAAMLLIALVCFQFLSSSVRGYAELVDGPLRASQLIDEANLQFKIQVQEWKNVLLRGRQPADMDKYWQQFQAREQQVQELLGQ LIDSSDARLKAPLQQLRDSHRQLGQAYAQGRQAFLAAGGDPVAGDQAVKGVDRAASEQMSELVEQLRADARQRAASISASAERTVWLGLLVMLASAVLVG LLSLWLVNRSLIEPIRQLIEYVAQLSQGRFAARVDSRREDELGRLARAANTLRDFLADTVGRLQDNAQELEGASGQLRSIAGDMARGTHDQFQRTDQVAT AMHEMSATAQEVARHAAEAARAADDADHSAQAGEQVMQQTIDIIGVVNREIAGTAAVIRDLEHDSTRIGKVLEVIRGIAEQTNLLALNAAIEAARAGEAG RGFAVVADEVRSLAQRTAASIAEIHQIIEAVQSGAVEAVKAIESGQQRSEEGAEQVQQAGQMLQRITQSVEAIRDMNRQIATAAEEQTSVAEDISRNLIE ITRIATANQQAVQHTEQAGQRLHGLSGQLGEVTSRLTA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|