Pseudomonas sp. LAMO17WK12:I4, D885_RS0113955

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00086 pac_2 IPR001610 PAC motif 788 830 1.3E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 341 442 5.58E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 432 566 7.5E-15
SMART SM00091 pas_2 IPR000014 PAS domain 447 517 0.26
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1016 1273 3.4E-107
CDD cd00130 PAS IPR000014 PAS domain 725 827 1.54146E-11
Pfam PF13426 PAS domain IPR000014 PAS domain 728 829 2.5E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 444 574 1.3E-6
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1017 1271 2.1E-102
Pfam PF08447 PAS fold IPR013655 PAS fold-3 472 561 1.7E-9
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 841 1002 4.9E-48
Gene3D G3DSA:3.30.450.20 PAS domain - - 719 842 3.2E-29
Gene3D G3DSA:3.30.450.20 PAS domain - - 275 439 6.0E-7
SMART SM00086 pac_2 IPR001610 PAC motif 666 708 7.8E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 728 838 3.49E-23
Pfam PF13426 PAS domain IPR000014 PAS domain 593 707 4.3E-5
CDD cd01948 EAL IPR001633 EAL domain 1022 1262 6.22267E-116
Pfam PF00563 EAL domain IPR001633 EAL domain 1022 1257 2.4E-76
CDD cd00130 PAS IPR000014 PAS domain 469 565 0.0019672
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 843 1012 1.9E-59
SMART SM00052 duf2_2 IPR001633 EAL domain 1016 1262 7.1E-128
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 836 1008 1.3E-43
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 838 1004 3.6E-39
CDD cd01949 GGDEF IPR000160 GGDEF domain 842 1004 4.21525E-59
SMART SM00086 pac_2 IPR001610 PAC motif 525 568 0.034
SMART SM00091 pas_2 IPR000014 PAS domain 580 646 3.7
Gene3D G3DSA:3.30.450.20 PAS domain - - 440 566 2.3E-16
SMART SM00091 pas_2 IPR000014 PAS domain 716 782 1.4E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 578 718 1.6E-19
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1021 1269 1.31E-93
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 716 1268 0.0
CDD cd00130 PAS IPR000014 PAS domain 589 705 0.00996433
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 565 706 1.03E-14
SMART SM00267 duf1_3 IPR000160 GGDEF domain 830 1006 1.9E-64
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 576 715 2.4E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 720 836 9.9E-17
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 846 1007 6.51E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.