Pseudomonas sp. LAMO17WK12:I4, D885_RS0112200
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTGATGATTTTCGAAGAGCTGGTCGAGCACAAGCTGGAGCAGCCGCACTTCATCACCGAGTACCCGTTCGAAGTGTCGCCGCTGGCCCGCCGTAACGA CGACAACCCGGCGGTTACCGACCGCTTCGAGCTGTTCATCGGTGGCCGCGAAATCGCCAACGCCTACTCCGAGCTCAACGATGCCGAAGACCAGGCCGAG CGCTTCCTGGCCCAGGTGGCCGAGAAGGACGCCGGTGACGACGAAGCCATGCACTACGACGCCGACTTCGTGCGTGCCCTGGAGTACGGCATGCCGCCGA CCGCCGGTGAAGGCATTGGCATCGACCGCCTGGTGATGCTGCTGACCAACTCGCCGTCGATCCGCGACGTGATCCTGTTCCCGCACATGCGTCCGCAGGC CTGAGTGATGTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCTGTACTGGCCCATGAGGTAACCCCTGTGACACCCGCC
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| DNA Sequence for Gene |
>D885_RS0112200
ATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAGCAGCGCCGCC AGCTGATCCTCGACGCCGCCATGCGCATAGTCGTGCGCGATGGCGTGCGTGGTGTGCGCCACCGTGCCGTGGCCGCCGAGGCCGGTGTGCCGCTGTCGGC CACCACCTACTACTTCAAGGACATCGAAGACCTGCTCACCGACACCTTCGCTCAGTACGTCGAGCGCAGCGCGGCCTACATGGCCAAGCTGTGGGCCAAC ACCGAGGTCGTGTTGCGCCAGTTGCTGGCCCAGGGCGACGGCAGCCCGCAGGCACGGGCGCGGCTGGCTGACGATGTGGCCCGCATGACGGCCGACTACG TACAGCGGCAACTGTTGACCCGGCGCGACTTCCTGATGGCCGAACAGGCCTTCCGCCAGGAGGCATTGCTGTGCCCACGCCTGGCCGAGCTGGTGCGCGC CCATGAGCAGATCCTGTTGCACGGGACCCGGCAATTGCTGCAAGTGGTAGGCTCGCGGCAACCGGAACAGGACGCCCAAATGTTGACGGCGATTATCGAG CAGATGGAATATCAGGGCCTGCTCAAGGATGCGAATGCGCAAGCCGATGGGCAGATGCTCGCTATGCTTACCCGATACCTGCAGCTGGTGCTGGCATCGG CCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGAGACCGACTTTTCAAGGAGAACCTGATGAAAGCCTGGCGTGTGGTGCTGTTGACTTTGTCATTCCTGCTGCTGGGCGGTTGTCTGGTGACCTTCCA TGAGCCGTTGCCGAGTAACCAGGCGGCGCCCAAGGCCCTGTTGGGCAAGTGGAGCAGCAAGGACGCCTGGGGCGAGCCGTTGAAGCTGACCATCAGCCGC AGCGGTGCAGATGCCTATAAGGCCGTTGCCACGGCCAAGGGCAAGAAGCCTGAGGAATATGTGTTTACCGTCTCCCGCCACGGCAACCGCTGGTACCTGT CGGCCGGCGTGCCCAAGCGCCTGGGTGGCAACTTCCTGATTGGCGGTTTCGATATCGTCGATGGCAAGGAACTGGTGGTGTACAACCTGGACGTCGAGCA GGTGCAGCAGGCGGTGGACAAGAAGGAACTGACCGGGCGTGGTATCGAGGTGCCGGAAGACAACGGCGACGGCGTGCTGATCGACAGCCCGGCTGCGCGG
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| Amino Acid Sequence |
>TetR family transcriptional regulator
MPDQGAAGIATAVAESVQYQGRKTARQGSEQRRQLILDAAMRIVVRDGVRGVRHRAVAAEAGVPLSATTYYFKDIEDLLTDTFAQYVERSAAYMAKLWAN TEVVLRQLLAQGDGSPQARARLADDVARMTADYVQRQLLTRRDFLMAEQAFRQEALLCPRLAELVRAHEQILLHGTRQLLQVVGSRQPEQDAQMLTAIIE QMEYQGLLKDANAQADGQMLAMLTRYLQLVLASA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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