Pseudomonas sp. LAMO17WK12:I4, D885_RS0111635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCAAGGTTCTGCAGCAGCAGGGTCTGGCCCGGCTTGCCGGCCAGGTCGCCGCGCTTGAGCACGGCGCTAATGGCACCCTCGCTGGCCAGGTCGACAGC CTTGGCCACAGCACCGAGCTTGCGGTTTTCACCTACCGGAATGACCAGTGTGGCGGTTTTTACGGATGCAGCAGCTACGCTTTTTACAACCAGTTCCATG TCAGGATCCCCGAATGATCGATACGAATGGCGCTGTGTGTGCCAGCGCTCTGGACGGGCCTGGCCGCTTAGTGGCGCGCCAGCGGAAAAGCTGCCAGTTT GAGCCTGCGGCAAGCGTGCTGACAACCCCGTTATGCGCGTTCATGCGCGGCCAAGTGACAGGGGCGGTCAATCACAGGATAATGCGCGCACTTTACATGG AGGTTCGCCATTGGCGAACCGGCATTGGTCTTGGATGTACTAAGTCATTGTTTGGCGCCATTGCATGGCAGTCCGCCCTGACAACCCAGGAGTGTCTGGT
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| DNA Sequence for Gene |
>D885_RS0111635
TTGATCGTCTTTCGTTATCTGTCCCGCGAGGTCCTGGTGACCTTGAGCGCCGTCAGCGCTGTGCTGCTGGTGATCATCATGAGCGGGCGCTTCATCAAGT ACCTGGCCCAGGCTGCCCAGGGCGTGCTCGACCCGGGCGTGCTGTTCCTGATCATGGGCTTCCGGTTGCCGGGTTTCCTGCAATTGATCCTGCCGCTGGG GCTGTTCCTCGGTATTCTCCTGGCTTACGGGCGCCTGTACCTGGAGAGCGAGATGACCGTGTTGTCGGCCACCGGCATGAGCCAGCAGCGCCTGTTGGGC CTGACCATGGTGCCGGCCGCCCTGGTCGCCCTGCTGGTGGCCTGGCTGAGCCTGAGCCTTGCACCGCTGGGCGTGGCCCAGGTGCAGCAGATCATCGCCC AGCAAGACGCGCTGACCGAGTTCGACACCCTGGTGCCTGGCCGCTTCCAGACGTTGCGTGACGGCTCGCGGGTCACCTATACCGAGCAGCTGTCGGATGA CCGCATCAACCTGGCCGGGGTGTTCATTTCCGAGAAGCGCTTCAACCAGGACAAAACCAAGGACCGCGCGCCGTCGGTGCTGGTCGCGGAAAAGGGTCAC CAGGAAATCCAGGCCGACGGCAACCGCTATCTGGTGCTGGAAAACGGTTACCGCTACGACGGTAACCCGGGCCAGGCCGACTACCGCGCCATCAAGTACG ACACCTATGGCGTGCTGCTGCCCAAGCCGGAAGTCAGCGAAGAAGTCACCGAACGTGAAGCCATCCCTACCTCCGAGTTGATCGGCAAGAAGGGCCTGCG TGAGCGTGCCGAGTTGCAATGGCGGTTGTCGCTGCCGATCCTGGTGTTCGTCGTCACCCTGCTGGCGGTGCCACTGTCCCGGGTCAACCCGCGTCAGGGC CGCTTCCTCAAGCTGCTGCCGGCAATTCTTCTGTACATGGCCTACCTGACAATGCTGATTTCCGTACGCGGTGCCCTCGAGAAGGGCAAACTTCCGATCG GCCTGGGCATGTGGTGGGTCCACGGTCTGTTCCTGCTGATCGGCCTGGGGCTGATGTACTGGGAGCCGCTGCGCCTCAAGCGCGCTGCCCGTCGTGCGGA GGTGGCCCATGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGACCGCTATATCGGCCAGAGCGTGCTGCTGGCCATCCTGGCTGTGCTGGGGATCATCCTCGGCCTGGCTTCGCTGTTCGCCTTCATCGATGAGATG AGCGACCTGAGTGATACCTATACGGTGATGGAGGCTGGCAACTTCGTCCTGCTCACCGCACCGCGGCGGCTGTACGAAATGCTGCCGATGGCGGCACTGA TCGGCTGCCTGATCGGCCTGGGCAGCCTGGCCAGCAGCAGCGAGCTGACCATCATGCGTGCGGCCGGCGTTTCCATCGGCCGTATCGTCTGGGCGGTGAT GAAGCCGATGCTGGTACTGATGCTGGTCGGCGTGCTGATCGGTGAATACGTGGCACCGGTGACCGAGAACAAGGCCCAGGCCGACCGCTCGCTGGCCCAG GGCGGGGGTGAGGCGCAAAGCTCCAAGCGCGGTATGTGGCACCGTCAGGGTGAAGAGTACGTGCACATCAACGCCGTGCAGCCTAACGGCCTGCTGCTGG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLG LTMVPAALVALLVAWLSLSLAPLGVAQVQQIIAQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKRFNQDKTKDRAPSVLVAEKGH QEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPEVSEEVTEREAIPTSELIGKKGLRERAELQWRLSLPILVFVVTLLAVPLSRVNPRQG RFLKLLPAILLYMAYLTMLISVRGALEKGKLPIGLGMWWVHGLFLLIGLGLMYWEPLRLKRAARRAEVAHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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