Pseudomonas sp. LAMO17WK12:I4, D885_RS0109550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGCATCTTGTACGAAAGCTACATTCACCCGCTGACCATTCTTTCGACACTGCCTTCAGCCGGTGTCGGGGCCTTGCTCGCGTTGTACGTCA CGGGGGGCGAGTTCAGCCTGATCTCGCTGCTGGGGCTGTTCCTGCTGATTGGCGTGGTGAAGAAAAACGCCATCCTGATGATCGACCTGGCCTTGCAACT GGAGCGTCACCAAGGGCTGTCGCCGGAGGAGTCGATTCGCCGGGCGTGCCTGCTGCGCCTGCGGCCGATCCTGATGACCACCCTGGCGGCCATTCTTGGC GCCTTGCCGCTGCTGTTGAGCCATGCAGAAGGTGCAGAAATGCGCCAGCCGCTGGGCCTGACCATCATTGGTGGCCTGGTGTTCAGCCAGATCCTCACCC TTTACACGACGCCGGTGGTCTACCTGTACCTGGACCGCCTGCGCCACCGTTTCAACCGTTGGCGCGGCGTGCGCACCGACGCCGCCCTGGAAAACCCGCT
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| DNA Sequence for Gene |
>D885_RS0109550
ATGACTTTTGCCCAGACCCCACTTCATCGTGCCCTGCAAACGCTGACCCGTGGGCGTGGCTCGCGCCTGCTCGGCGCCGGGTTGTGCGTGGCCCTGCTCA GTGCCTGTACCTTGAGCCCGGACTACCATCGCCCCGAACTGAACAGCTCGGCGGCGCAGTTCAAGCACGCCGAAGGCTGGACCCAGGCCGCCCCATCCGA CGCCATCGCCCGCGGCGCCTGGTGGGAAATCTACGGCGATGCCGGGCTCAATGCGCTGGTTGAGGAACTGAACCGTAGCAACCAGACCGTAGCGCAATCA GAAGCCCAGTACCGCCAGGCCCAGGCGCTGGTGCGCAGCAGCCGCGCGGCGTTGTTCCCGAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCCCAGG GCACCGGCAGTTCCAGTTCGAGCCTGTCCAACAACAGCAGCGGTATTCGCAACACCTACAACGCGCAGTTGGGTGTGAGCTGGGAAATCGACCTGTGGGG CAAGCTGCGCGAAACCATGAATGCCAACGAGGCCAGTGCCGAAGCCAGCTTCGCCGACCTCGCGTCGATCCGCTTGAGCCAGCAATCCGAGCTGGTGCAG AACTACCTGCAACTGCGGGTAATAGACGAGCAAAAGCGTCTGCTGGAAGCCACTGTGGCGGCCTACGAGCGCTCGTTGCGGATGAACGAAAACCAGTATC GCGCCGGCGTTGCGGGGCCGGATGCGGTGGCCCAGGCGCGCACCCAGCTCAAGAGCACCCAGGCTGACCTGATCGACCTGATCTGGCAGCGTGCGCAGTT CGAAAACGCCATTGCCGTGCTGTTGGGCAAAACCCCGGCCGACTTTGCTCTGGCCGACAGCAAGGACATTCCTGCGCTGCCGCAAATCCCGGTATCCCTG CCTTCGCAGCTGCTGGAGCGGCGCCCGGATATTGCTGCTGCCGAGCGTAACGTGATGGCCGCCAATGCCAACATCGGCGTGTCACGGGCGGCGTATTTCC CCGATCTGAGCCTGAGCATGAGCGGCGGCTATTCCAGCAGCAGCTTCAGCAACTGGATCGAGCTGCCCAACCGCTACTGGTCGGTAGGCCCGCAACTGGC GCTGACCCTGTTCGACGCTGGCAAGCGCAGCGCCGAGGTCGACCGCACGGTGGCCGCGTATGACCAGACCGTGGCGCAATACCGCCAGACCGTGCTCGAC GGCTTCAAGGAAGTGGAGAACCTGCTGGTGCAGTTGAAGGTGTACGGCGATGAAGCGGTGGTGCGCCAGGAAGCGCTGGATGCCGCCCGCGAGTCGCTGC GCCTGACCGAGAACCAGTACCGCGCAGGGTTGATCGGCTACCTGGATGTGGTGAACGTGCAGACCACGGCATTGAGCAACGAGCGCAGTGTGTTGAACCT GTTGCAAGGTCGCTTGGTGGCCAGTGTGCAGCTGGTGGCTGCGCTGGGTGGCGGCTGGGATGCAGAACAGGCATTTGCCGAGCAGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGCTCTCTGCGTTCCAAAGGGGCTGGACATTCTCCCGCAGAGAGTGCATTGGATCCATTCCCATTCGCAGAAACCCCGTGCGTTTCGCCTAAGCTTGA GTACAATCGTCAGCTTTTGCCGGGCCCCCTGTCCCGTCGCTGGAACTCCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGCTGATTTCGCTGTGCGT GGCGATTCTGGCGTCTTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGGCCAAGGGCCGGGCTGCCTACTTGTGGATGGGGGGCGGCGCGTTGGCC ATGGGCATCGGCGTGTGGTCGATGCACTTTATCGGCATGCTCGCGTTCAGCCTGCCTATCGACCTGGGTTATGACCTGGCGCTTACCGCGTTCTCGCTGC TGATCGCCGTGCTGTCCTCGGGCTTTGCCCTGTGGCTGGTTAGCCAGCCGAGCCTGCCGTGCCTGCAACTGGGCTTCGGCGCGCTGATCATGGGCGCCGG
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| Amino Acid Sequence |
>RND transporter
MTFAQTPLHRALQTLTRGRGSRLLGAGLCVALLSACTLSPDYHRPELNSSAAQFKHAEGWTQAAPSDAIARGAWWEIYGDAGLNALVEELNRSNQTVAQS EAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQGTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETMNANEASAEASFADLASIRLSQQSELVQ NYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQRAQFENAIAVLLGKTPADFALADSKDIPALPQIPVSL PSQLLERRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRTVAAYDQTVAQYRQTVLD GFKEVENLLVQLKVYGDEAVVRQEALDAARESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDAEQAFAEQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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