Pseudomonas sp. LAMO17WK12:I4, D885_RS0103140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGCCGCAGTACCTGGAGCAACTGCCCAAGGGCTTCGATCCGCTGCTGCTCGGCACGCTGCCGAGCCTGCATTGGGGCAGCGCACAGCGTGAGTACCA GTGGGAGCTGTTCCAGGGTGAAGACAGCAGCCGCAGCATTGTCATCCCGCATACGCCGCGCATGGTGACTGACGATTTGTTTGCCCTGCGCCATTTCGTG GTGGCTGGGGTGGGGATTGCGCATTTGCCGCGAGTGGCAGTACGCGAGGACCTGGCGGCGGGGCGGCTGGTGGAGCTGATTCCAGACTGGCACCCGCGCT GTGGCATCGTGCATGCGATTTTCCCGTCGCGAAGGGGGTTGCTGCCTTCCGTGCGGGCGCTGATCGATCATCTGGCTGAGGAATTCGCCATTAGCGACAT GGCTTGAGTGCTGAACAGGTAAACCAGATCCCAGCACACCCTTACAAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCTCC
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| DNA Sequence for Gene |
>D885_RS0103140
ATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACGCTCGCCCTCTGCCCGGCGCTCAGCCAGGCGGATGAGTCCGGCTGGTCGTTGCTCA GCCGCAACTACTTCCTGCACAGCGACTTTCGCTCGCCCTCTGCCAGCGGCCAGAACTACCGCCAGGAATGGGCACAGGGTTTCATCGGCGAGGTCCGCTC GGGCTTCACGCAAGGCACGGTTGGCGTGGGCATCGATGCCCACGGTTTTCTTGGCCTGAAGCTCGACGGCGGCCGTGGCCATGCCGGCACCGGTTTGCTG CCACGCGATAGCAATGGCCGCGCCGAATCCGACTACTCCAGCGCCGGCGCCGCGCTCAAGCTGCGCCTGGGCAACACCCAGTTGCGCTACGGCGAAATGA ACGTGGAAACCCCGGTGTTCGACACTGGCGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTTCGTGGAAAACACCGACCTGCCCGACTGGCGCCT GCAGGCCGGGCGTTTCACCGCCTTCAACAACCAGGACAACAGCGCCACCCGCGATGATTTCAGCGGCTACGGCGTCACCACCCACAACCGCGCCATCAGC CTGGCCGGCGCCACCTTCGCGCCCACTGGCCCGTTTGGTGGCGCGCTGTATGCCGGGCAACTGCAAGACACCTGGCGCCAGGCCTACCTCAACCTGAACC TGGCCGAAGGTAACTGGCGCGTGGACGGCAATCTCTACAAAACCCGCGACACCGGCAACGCCAGTGGCGGGGCAATCGATACCCTCGCCTACAGCCTGCT GGCCAAGTACAGCTTCGGCGCCCAGGCGCTGAGCCTGGCCTATCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGATTCCATCTACCTG GCCAACTCGATCAAGTACGCCGACTTCAACGGCCCGGGCGAGCGTTCGTGGCAACTGCGCTACGACCTCAACTTCGCCACCCTCGGCCTCCCCGGCCTGA GCGTGATGGGCCGCTACGTCAGCGGCCGGGGCATCGACGGCAGCCATGCACCAGCCAGCGGCGCCTACGTTGGCCAGTACGGCGACGGCGGCAAGCACTG GGAGCGCGACATCGACCTGAAATACGTGGTGCAGTCAGGCGCCGCCAAGGACCTGAGCCTGTCGTTCTCCCACGTAAGCCATCGCGCCAACCAGGCCCAG GCCGGCGATGACATCGACCGTATCTACCTGATCATCGAATACCCACTCAAAGGCAGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATGAGCACATCCCCTTCAGGCGCCTGGAGCCCGTTGCGCAACACCACCTTCCGCATGCTATGGATCGCCACCATCGCCTCCAATATCGGCACCTGGATG CACGAGGTGGGCGCCGGCTGGTTGATGACCACACTGTCGGCCAGCCCGCTGCACGTGGCGCTGATCCAGGTGGCCGGCTCGCTGCCGATGTTCTTCCTGG CCCTGCCAGCGGGCGCAGCGGCGGATATCGTCGACAAGCGCCGCTACCTGTTGCTGGTGCAGCTGTGGATGTCTGCCGTGGCCGTGGTGCTGGCAGCCCT GACCCTGCTTGGGCTGATGAACGTGACCTTGCTGCTGGTGCTGACCCTGGCACTGGGTATCGGGACGGCGTTGATGATGCCGGCCTGGAGCGCACTGACA CCGGAGTTGGTGGGCAAGGAAGACCTGGCCAACGCGGTGGCCATTTCCAGTGTGGGCATCAACGTGTCTCGCGCCATTGGCCCGGCCTTGGCCGGCGTGG
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| Amino Acid Sequence |
>membrane protein
MIRATHGPGRALLATLALCPALSQADESGWSLLSRNYFLHSDFRSPSASGQNYRQEWAQGFIGEVRSGFTQGTVGVGIDAHGFLGLKLDGGRGHAGTGLL PRDSNGRAESDYSSAGAALKLRLGNTQLRYGEMNVETPVFDTGDKRLHPEYATGWFVENTDLPDWRLQAGRFTAFNNQDNSATRDDFSGYGVTTHNRAIS LAGATFAPTGPFGGALYAGQLQDTWRQAYLNLNLAEGNWRVDGNLYKTRDTGNASGGAIDTLAYSLLAKYSFGAQALSLAYQKVEGDTPFDFVGGDSIYL ANSIKYADFNGPGERSWQLRYDLNFATLGLPGLSVMGRYVSGRGIDGSHAPASGAYVGQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQ AGDDIDRIYLIIEYPLKGSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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