Pseudomonas sp. LAMO17WK12:I4, D885_RS0101810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCGGCCATCCAGGCCTCGCTGGCCGGCGAGGCTGGCCGTGGTTTTGCCGTGGTTGCCGACGAAGTGCAGCGCCTGGCAGAGCGCTCGTCGTCGGCCAC CCGGCAGATCGAGGCGCTGGTACGTACCATTCAGGCCGACACCAACGAGGCAGTCATCTCCATGGAGCAGACCACCGCCGAAGTGGTGCGTGGCGCTCGC CTGGCGCAGGATGCCGGGGTGGCGCTGGCCGAGATCGAAGGGGTATCGCAGAACCTGGCCGATCTTATCCACAGCATCTCTGACGCTGCCCAGTTGCAGA CCTCGTCGGCCGGGCAGATTTCCCACACCATGGCGGTGATCCAGCAGATTACCGCACAAACCTCCGCCGGCTCCGGTGCCACCGCCGACAGTATCCGCCA CTTGGCCCGCATGGCCAGTGAGATGCGCCGTTCGGTGTCCGGTTTCACCCTGCCGCCACCTGCGCAAAGCCCCACCGATGCGCCGCGCTGAGGAGTGCCC
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| DNA Sequence for Gene |
>D885_RS0101810
ATGGCTTCTGCTGCTGTAAGTCCCGAACGCCACGACACCGTAGCGCTGGCCTGGACCAAGGCTGCCATCCTCGACTGCTTGGGCCAGGCGCGCCAGGCGC TGGAGCGTTTTGCCGGCGAACCGGGCGACCTGTCGATGCTGGCCTTCGTGGTCGACAACCTGCATCAGGTACATGGTTGCCTGCGCATGCTTGAACTGCG CGGAGCGACGCGCCTGGCCGAAGAGCTGGAACTGTTCGCCAAGGCGCTGGCCGACGGCCAGGTCAGCCCACGGGGCGATTGCCTGGGGGCGTTGTTTCGT GGCCTGGAGCAATTGCCTTCGTACCTTGAGCGCTTGCGCGGTGCCCGCCACGACCTGCCCTTGGTGATGCTGCCGCTGCTCAATCAGTTACGTGCCTGCC GAGGTATCGAGCCCTTGGCCCAGGCCTGCCTGATCAGCGGTGCAGCACAGCGTTTTGCCGGCGCCGACGACTTGGCCAACCTTGACCTGTCGTTGGGCAA TTGGCGTGAACAATTGCAAGCCGGGCCGGGCCGCGATGCCCTGCGCTCGGTGGTGACTGCTCTGTGCGACGACCTGATGCGCATCAAGGAGCGCCTGGAC CAGTTCGTGCGCAGCGACCGCCAGCACAGCGAGCAGCTCGATGCCCTGCTGGCGCCGCTGCGGCATGTAGCCGACACCCTGGCTGTGCTGGGCTTCCAGC AACCACGGCGGGTCATCATCGACCAGGTGCTGGCGCTGCAGGCCTTGGCCCAGGGCGAGCGCGTGGTGGATGACGCGGTACTGATGGATGTGGCGGGCGC CTTGCTGTACGTGGAGGCTTCGCTGAACGGCATGGTCGGCCCGCTGGAAGAAAACGGGCAGGGCGGGCTGCCAGGCTCGGACCTGGCCGAGATACGCCAA CTGGTGCTGAACGAATCGCTGAACGTACTGCAGCAGGCCAAGGACCTGATCGGCGACTACCTGGAGTCCGACTGGCCGCGCCAACGCCTGCAACCGTTGC CGGGGCTGTTGCAGCAGATTCGCGGCGCGCTGGCCATGTTGATGCTGCCCGCAGTAGCCGAGCTGTTCGCCGGCTGCGCCAGCTATGTGCAGCGCTGGTT GCAGCACCTGGATGTAGAGCCGCCCGCCGATGAGCTGGCCCACTTGGGTGAGGCCATGAGTGCCGCCGAATGCTACCTGCAATGGCGGGTGGCCGACCCG CTGGCGGATGCCCAGCCGTTCATCGACATGGCCCGTGCCAGCCTGGCAGCGCTGGGCGTGTATTGTGCGCAGGCCGACACCCGTGCAGGCCTGGATGCCA ATGGCGACGGTATCGATGACGAGCTGCGCGAGGTGTTTCTCGATGAAGCCGGCGAGTTGCTGCCGGAGATCGAGCGGCACTGGCTGCGCTGGCGTGCCGA CAACCAGCAGCGCGAGGCGCTGGGGGAAGTACGCCGTGCGCTGCATACGCTCAAGGGCAGCGGCCGCATGGTGCATGCCGAAGCGGTGGCCGAGCTGGCC TGGGGCGCCGAGCACCTGCTGAACCGGGTGCTGGAGGGCCGTAGCGTGCTGAGCCCGGAAGGCGTGGTGGCCCTGCAGCAAGTGTTCGTCCACCTACCTG ATTTGCTGGCCGACTTTGCGGCTGGGCAATTGCCGCAACTGACCGAAATCGAACAGTTGGCTGGGCACCTGCATGCCCTGGCAGAAAACGACGAACCGGG TGCTGCCGATATCGATGGCCTCGACCCGCAGCTGCTGGATATTTTCCGCACGGAGGCGCAAGGCCACCTGGCCAGCCTCGATGCATTTCTGCAAGGCGCA GACGGCCACGATACGCCGGTCAGCGATGGCCTTCAGCGCGCCCTGCATACGCTCAAGGGCAGTGCTGCCATGGCCGGGGTGATGCCGGTCGCCGAGCTGG CCACCGCCTTCGACCGCCTGGCCCGGGAATACAAGGGCCACCAACTCCCCCTGCAAATGGCCGAGATCGAATGGCTGGAAGCCGCACGCTCGCTGTTCCA CCTGGGTCTGGCGCAACTCGACAGCACACCGTTGGCCGCCATCGCTGGTGCTGCGGAGCTGATCGAACAGGTTGGCCAGGCCGTAGACGCACGCCTGGCC AGCTTGCATGACGACCCGCAGCATGTCCGGCGCGGCAAGCGCGACCCGCAGTTGGTCGCCAGTTTCCTGGCCCAAGCCATGGATATCCTGCTCGATGCCG AGTCGTTGCTATCGCGCTGGCAGCAACAGCCTGGGCAGCGTGATGCGCTGGACACCCTGCTCGACCAGCTGACCACCCTGGGGCACGCCGCGCACCTGGC CGACTTGTGGCAGATGGATGATGTGTGCGAGGCCTTGCTGGACCTGTATGGCGCCGTGGAAGAGGGCAGCCTGCCTGCCAATGCGCGTTTCTTCGCCCAC GCCCGGCGCGCCCATGAAGCCCTGCTGGACATGCTCGATGAAGTGGCGGCCGGGCAGGACATCGCGCCGCGGTCAGAAACGCTCGACGGTCTGCGCAACC TGCTGGACCAAGCCTTGGCGCCAGAGGCCACTGGTCTGGTGGGCATCGACACGGTCACGCCGTTGCACCCGGACATGGACGTGGCCGATACCCTGGGCCT GGGGCTGCCCCATCAGCCGCAGCTGCCTGACGTGACCGAGCCTCTGCTTGAGGAACCGGAAAGCCCAGGCGAAGAGCTGCTGGAGGTGTTCCTCGAAGAA AGCTCGGACATCGTCGAAAGCGCCGCCGCAGCCTTGGCGCGCTGGCAGGCCGACCCGCGCAGCAGCGTCGAGGTAGACAACCTGATGCGCGACCTGCACA CCCTCAAGGGTGTGGCGCGCATGGTCGAAATTGCCCCCATTGGTGACCTGGCTCACGAACTGGAGTTTCTGTACGAACTGCTGGCTGCCGGCCGCTTGCC GCCGAGCGCGCCTTTGTTCGCGCTGTTGCAGAACTGCCACGACCGCCTGGCGCACATGCTCGATGCCGTGCGTCTGGGGCAGCCACTGCATGCCGCCACG GCGCTGATCGACTATATCCGCAACTTCAGCAGCGCGGCCCTGACCGACAGTGCTGCCGGCCAGGGGCCGGTCGAAGCCGCCGCCAGCGAGGTGCCGACAG CAGCGCCAGAGCGGGCGCCAGGCGACATGGTCAAGGTCGATGCCGAGTTGCTCGACGACCTGGGTAACCTGGCGGGTGAGCACTCGATCATCCGTGGGCG CATCGAGCAGCAAGTCAACGATGCACAGTTCACCCTCAACGAGATGGAAACCACCCTGGAGCGCATGCGCGACCAGCTGCTGCGCCTGGACATCGAGACC CAAGGGCGAATCTCCAGCCGCCAGCAGTTCGAAGGCGATGCCTATGATGATTTCGACCCACTGGAAATGGACCGTCATTCACAGTTGCAGCAGTTGTCGC GGGCCTTGTTCGAGTCCGCCTCGGACTTGCTCGACCTGAAGGAAACCCTGACTCAGCGTGCCCAGGAGGCCTACAGCCTGCTGCAGCAGCAGGCGCGGGT GAACAGCCAGTTGCAGGAAGGCTTGACCGCAACCTTGATGGTGCCGTTCGAGCGCCTTGTGCCGCGCTTGCAGCGTGTGGTGCGGCAGGTGGCCAGCGAG CTGGGCAAGCAGGTAGAACTGGTGGTCGGCAACGCCGAAGGTGAACTGGACCGCAGTGTGCTTGAGCGCATGGTGGCACCGCTTGAGCACATGCTGCGCA ACGCCGTCGACCATGGCCTGGAAAGCCGCGAAGCACGCCTGGCCGCCGGCAAACCGGAGCAGGGCACCATCCACCTGAATTTGCTGCACGAAGGCGCCGA TATCGTGATCGAAATGACCGACGACGGTGCTGGCGTTCCGCTTGAAGCGGTGCGGCGCAAGGCCATCAAGCGCGGCTTGCTGGACCCACAGGCGCAGTTG AGCGATCACGAGATCCTGCAGTTCATCCTGCGCCCGGGTTTTTCCACCGCCGAGAAAATCACCCAGATCTCCGGGCGCGGCCTGGGCATGGACGTGGTGC ACGAGGAGGTCAAGCAACTAGGGGGCTCGATGAGCATCGAGTCGGCTCAGGGCAAGGGCGCGCGTTTCCTCATCCGCTTGCCGTTCACCGTGTCGATCAA CCGGGCACTGATGGTGCATCTGGGTGAGGAGCAGTACGCCATCCCGCTCAATACCATCGAGGGCATCGTCCGTGTGCCGCCGGCAGAGCTGGCGGTGTGC TATCAGCTGGACCCGCCCCGCTATGTTTATGCCGGCCATGAATACGAGCTGCGTTACCTGGGCGAGTTGCTGCAAGGCCTGCCGCGCCCGGCCTTGCTGG GGCAGAGTGTGCCGTTGCCCGTGCTGCTGGTGCATGCCAAGGAGCAATCGTTCGCCATTCAAGCCGATAGCCTGTCGCCCAGCCGCGAAATCGTGGTGAA GAGCCTGGGGCCGCAGTTTGCTGCCGTTGCCGGGCTGTCGGGGGCGACGCTGCTGGGCGACGGCCGGGTCGTGCTGATTCTCGACCTGCTTGGCCAGCTG CGCGGCCAGCAGCGGCGCCTGGCTCGTTTGCCCGGTGGCGGCACCCCACGCCAGTTGCTCGGCCCGGTGCCGCGCCGCGCATTGTTGGTGATGGTGGTGG ACGACTCGGTGACTGTGCGCAAGGTTACCAGTCGCTTGCTGGAACGCCACGGCATGAGCGTGCTGACGGCCAAGGACGGGGTCGATGCCATGGCCTTGTT GGAAGAGCACCGTCCGGACGTGTTGCTGCTGGATATCGAGATGCCGCGCATGGACGGGTTCGAGGTGGCCACTCGCATTCGCCGTGACGCGCGGCTGAAA GACCTGCCGATCATCATGATTACCTCGCGTACCGGGCAGAAGCACCGCGACCGCGCCATGGCCATCGGCGTCAACGAATACCTGGGCAAGCCGTATCAGG AGTCGTTGTTGCTGCAGAGCATTGCACACTGGAGCCAGCCTCATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTGATTGCCGGCCAGCGCAGCAGCCTGACCGGGCTGTTGCTGCCCTTGGGCGACCGCACCCTGGTATTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGC CAGCGCAATTTGGTGTGCCAACGCGGTGAGCCGGCCTGGCACCTGGGCTGGATCGACTGGCGAAAGCAGCGCCTGCCGCTGATCGGGTTCGAAGCGGCGT GTGGTGGCGAGACGCCGTGCGGCGAGCGGGCGCGGGTTGTGGTGCTCAATGCTTTGGGCGACACCGGCCTGCGCTATTTGGCGCTGTTGCTGCAGGACAT TCCGCGTTCGTGCAAGCTCGACAGCCAGCTGAATTATGTGGATGTGGCGCTGGGGCGCCTGGAGCTGGCGGCGGTGCAGGTGGGCGAGCAGGTGGCGCGG GTGCCTGACCTGGCCGGGCTGGAAAGGCTGGTGCGTGACGCGGAACTGCAACCTGAGTTTGGGTAAGATTCAGGGCCGTCACTGACGGAATGAGGAACCC
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| Amino Acid Sequence |
>chemotaxis protein CheA
MASAAVSPERHDTVALAWTKAAILDCLGQARQALERFAGEPGDLSMLAFVVDNLHQVHGCLRMLELRGATRLAEELELFAKALADGQVSPRGDCLGALFR GLEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGIEPLAQACLISGAAQRFAGADDLANLDLSLGNWREQLQAGPGRDALRSVVTALCDDLMRIKERLD QFVRSDRQHSEQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERVVDDAVLMDVAGALLYVEASLNGMVGPLEENGQGGLPGSDLAEIRQ LVLNESLNVLQQAKDLIGDYLESDWPRQRLQPLPGLLQQIRGALAMLMLPAVAELFAGCASYVQRWLQHLDVEPPADELAHLGEAMSAAECYLQWRVADP LADAQPFIDMARASLAALGVYCAQADTRAGLDANGDGIDDELREVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAELA WGAEHLLNRVLEGRSVLSPEGVVALQQVFVHLPDLLADFAAGQLPQLTEIEQLAGHLHALAENDEPGAADIDGLDPQLLDIFRTEAQGHLASLDAFLQGA DGHDTPVSDGLQRALHTLKGSAAMAGVMPVAELATAFDRLAREYKGHQLPLQMAEIEWLEAARSLFHLGLAQLDSTPLAAIAGAAELIEQVGQAVDARLA SLHDDPQHVRRGKRDPQLVASFLAQAMDILLDAESLLSRWQQQPGQRDALDTLLDQLTTLGHAAHLADLWQMDDVCEALLDLYGAVEEGSLPANARFFAH ARRAHEALLDMLDEVAAGQDIAPRSETLDGLRNLLDQALAPEATGLVGIDTVTPLHPDMDVADTLGLGLPHQPQLPDVTEPLLEEPESPGEELLEVFLEE SSDIVESAAAALARWQADPRSSVEVDNLMRDLHTLKGVARMVEIAPIGDLAHELEFLYELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAAT ALIDYIRNFSSAALTDSAAGQGPVEAAASEVPTAAPERAPGDMVKVDAELLDDLGNLAGEHSIIRGRIEQQVNDAQFTLNEMETTLERMRDQLLRLDIET QGRISSRQQFEGDAYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLTQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASE LGKQVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESREARLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQAQL SDHEILQFILRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAELAVC YQLDPPRYVYAGHEYELRYLGELLQGLPRPALLGQSVPLPVLLVHAKEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQL RGQQRRLARLPGGGTPRQLLGPVPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEVATRIRRDARLK DLPIIMITSRTGQKHRDRAMAIGVNEYLGKPYQESLLLQSIAHWSQPHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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