Pseudomonas sp. LAMO17WK12:I2, D883_RS0129875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCGTGAGGCCACGGCCTTCGCCACCCTTGAGCAGGGTGCCGACACGCTCCTTCATTTCCCGCGCGGCCTTGTTGGTAAAAGTCATGGCGACGATGTAC TGGGCGCGGATGCCACAGTTCTGGATCAGGTGCGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAACCTGCACCGGCGAGCACCAATAGAGGGCCGC CGACGTAGTTCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACGGAATTCAGGGAGTCGTTGTTCAAAAGGGCGGGCATTTTAACAGGCTGGCAA GATTCTGCTGCCCTGGATCGACGGTGTGACGTACCACTCGATCTAAATTTGCCGGTTTTGCTACTTTGCCGCAGGATGTCGGGGTTTTTAGACAATTGCT TACAGCCTGCGTATTTGATAACCCCTATCATTGGTGATTATCAGGCCGCACGTCATAATGCCCGCCGCCAACGAATTTTTGCAGAGTCTAGGGAGCTAGC
|
|
| DNA Sequence for Gene |
>D883_RS0129875
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTGCTGGCCGATACGCCTGAGTGGGCAGCGTTGTTGCGCGAGTGCCTGGCGCCGATGGGCGATGGGG CTGTGCTGATCAGCGCGCCAAACTGGGACTCGGTGAGTCGTCTGTTCGATGACGACGACAGCGCAGTGCTGTTGACCATGCCCAGCCTGCAACCCGGCCC TGGCCGTTGCAGCTTGCCGTGCGTGTTGTTGTTGGAACAGGAGCCGTTGGTTTCGCCACTGGGCGTCAGTGACTGGCTGATCCGCAATGCGCTGGACGCC GACACGTTGCGTCGTTGCCTGCGCCATGTGCGGGAGCGGGGGGTGCTGGAAAACACCCTGCAACGCCTGGCCGAGCAGGACCCGCTCACCGGCATCGCCA ACCGCCAGGGCTTCCAGACCCTGCTGGCCGCACGGTTGGCCGAGAACGAAGGTCGCGGCCTGGCCCTCGGTCACCTGGACCTCGATAATTTCCGCCATGC CAACGATGCCCTCGGCCACCAGGCCGGCGACCGCCTGATCCTGCAAGTGGTCTCGCGGCTCAAGAGCCAGCTGGAAGCCGGCGATCAACTGGCGCGCCTG GGCAGCGACGAATTCGCCCTGCTGATCGATACGCGCCGCGCGCCCCAGCGTGCGGAGTGGATGGCCGAGCGCATCACCGAAGCCATGGCCGAGCCGTATT GGGTGGATGGCGAAAGCCTGCTGATCGGCTGCAGCCTGGGCGTGGCCCATGCCCGCGCCCGTGCCGGCGCCGACCCGCTGATGTGGCATGCCCATATCGC CATGCAGCAAGCCAAGAGCACCCAGGGCTGTACCTTTCATATCTTCAACGAACGTATCAACCGCAACGCGCGCAGCCTGGCCGACCTGGAAAGCGAGCTG CGCCGTGCCTTGCGCCGTGATGAGCTGGAGCTGCACTACCAGCCGCGCCTCGACCTCGACGACGGGCATATCGTCGGCCTGGAAGCCCTGGTGCGCTGGC GCCACGGCGAGCGCGGCCTGTTGCCGCCGAGTGAATTCGTGCCCCTGGCCGAACAGAGCGGCCTGATTGTACCGTTGGGTTACTGGGTGATTTCCCGAGC CCTGCGTGACATGCAAGACCTGCGTGAACGCGGCCTGCCGCCGCTGCACATGGCGGTCAACCTGTCGTTTCGCCAGTTCCAGGACAGCCAGTTGCTTTCT ACACTGAGCCGGCTGATCAGCGAGCGCGGCGTGGAAGCGCAATGGTTGGAGTTCGAACTGACCGAAACCGCGGTGATGCGCCGCAGTGACCTGGTCAAGC AGACCATGGACGCCCTTGGTCGCCTGGGTGTGCGGTTTTCCCTGGATGACTTCGGCACCGGTTTTTCTTCGTTCGTGCACCTCAACAGCCTGCCGATTGC GTTGTTGAAAATCGATAAGAGCTTTGTCGGCGGCATGGAAGAGCGTGAGGAAAACCGCAAGCTGGTGCACGCCATGATCAATCTGGCGCACAACCTCAAT CTGGAAGTGGTGGCCGAAGGTGTGGAAACCCCCGAGCAACTGGCGCTGTTGCGGCTGTTCGGCTGCGACCAGGCCCAGGGTTACCTGATCAGCAAGCCGC TGCCGTTGCCGGAGCTGGTGGAATACCTGACCTTCGGCGACGGCAAGCACACCCGAGTGAGCGAGGGGCTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGGCCTGTACCGCCTGAAAGCCGATGTCGGCTTCGGGCGCCGGGCCTTCCCGGCGAATCATCCGCTTCATCTTCGCTTCAAACGCCCAGGTCAGGCTTA TCGCGGCGCAGGCCAGTCCCAGTGCCAGGCCCCACCACACGCCGGTTGGCCCCCAGCCCAACGTGAAGGCCATCAGCCAGGCCGAGGGTGCGCCAATCAA CCAGTAGCAGCCCGCACCGATCAGGAACGTGGTCTTGGCGTCCTTGAGCCCGCGAATGCAACCCATGGCGATGGTCTGCACGCCGTCGAACAGCTCGAAC CACGCGGCGACGGCCAGCAGGCTCACGGCCAGGACGATCACGTCGTGGAACGCCGGGTTGTCGTGGTCGATCAGCAGTCCTATGAGCGGCTCGGAAAACA GCCACAGCACCGCCGCGAATCCCAGCATTATCGCCGCGCCAAAGCCTATGCCGACACGCCCGGCCATGCGTGCCTGCAGCAACTGCCCGGCGCCATAATG
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLADTPEWAALLRECLAPMGDGAVLISAPNWDSVSRLFDDDDSAVLLTMPSLQPGPGRCSLPCVLLLEQEPLVSPLGVSDWLIRNALDA DTLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEAMAEPYWVDGESLLIGCSLGVAHARARAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL RRALRRDELELHYQPRLDLDDGHIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQDLRERGLPPLHMAVNLSFRQFQDSQLLS TLSRLISERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLN LEVVAEGVETPEQLALLRLFGCDQAQGYLISKPLPLPELVEYLTFGDGKHTRVSEGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|