Pseudomonas sp. LAMO17WK12:I2, D883_RS0129610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCGCGCTGCTGCTGACCGCGTGTAGCAAGGATGCGGTCAAACCCGAAACGGCTGCTGAGGCTGAAGTGGACACCGCCGCCGTCGAGCTGCACTTCCAC GCCATTGCCGGGCTTAACCCCGGCGCCAACGGCCAGGCCGCGCCGGTGCGGGTGCGCATTTTCGAACTGAAGAACGCCGCCACCTTCGCCCGCTCCGATT ACTTCGCCCTGGCCGACCGTGCGCAATCGACCCTCGGCCTGGACCTGCTGGACCAGGACGAAGTCATGGTGCAACCCGGCCAGCAACTGAGCATCCAGCG CGACCTCGACCCCTCCACGCGCCAGATCGGCTTGCTGGTGGGTTATCGCGAGTTGGACCGCGCGCAATGGCGCACGGTGATCAACGTGCCGGCGCGCCAA TACACCGAATACCAGATCAGCCTCGATGTGCGTGCCGTGCGCGCCGACGTCGTGGTCACCCCATCCAGCCCTGCCCAATAAGAAGCAATCGGAGCTCCCC
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| DNA Sequence for Gene |
>D883_RS0129610
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGGAACGCAGCACTTCCAGCAGCATGACCGTTACCTGGAAAACCTGATCGACGCCC GTAGCCGCCCGTTGTCCGCCGGCGCCTGGGGGTTTTCCGAATTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGCCATCGTCTCGGCGCGCGG CCTGTTGCCCGACGGCACGCCGTTCAACATTCCCCAGGATGACCTGGCGCCCAGCCCGCTGAACATCGACGACAACCTGCGCGATGGCCTGGTCTACCTG GCCTTGCCACTCAAGCGTGCGGGGGCCCGCGACACCGTGGATGAAGGCGAACCCCTGGAAGCCGCGCGCTACGTGAGCCAGGTGCGCGAAGTGCGCGATG ACAACGCACCGTTCGAAAACCGCGCGCCGGTGGCCGTGGGTTCCCGGGCCCTGCGCTTGCTGACCGCCCAGGATGGCATCAGTGACTACGCCGCCGTGGG CCTGGTGCGCATCAAGGAAAAACGCGCCGACCGTGCGCTGGTCCTCGACGACAGCTACATCCCGCCCGTGCTGGACGTGGCCGCGAGCAAGCCGTTGAGC GCGTTTCGCAGCGAACTGCTGGGCCTGCTGCACCAGCGCGGCGAAGCCCTGGCGGGCCGCGTGGTTGCCTCGGGGGCCGGCGGTGCGTCGGAGATCGCCG ACTTCATGCTGCTGCAACTGGTCAACCGCGCCCAGCCGCTGATCCAGCATTTCAGCCAGTTGAGCCCACTGCACCCGGAGCGCTTTTTCAGCGCACTGGT CAGTCTGGCCGGTGAGTTTTCGACCTTTTCCACCTCGAGCCGTCGTCCCCAGGAATACCCGCAATACCAGCACGACGACCTGGCCCTGAGCTTCGCCCCG GTCATGGCGGCCCTGCGCGAAGCCCTGTCGATGCTGATCGACAGCAAGGCCACGCCGATCCCGATTGTCGAGAAAGCCTACGGCGTCCACGTGGCCATGC TGGCCGACAAAACCTTGCTCGACAGCGCCAGCTTCATCCTCGTGGTCCGTGCCGATGTGCCCGGCGAAACCCTGCGTGCGCGCTTCGGCCAGCAGAGCAA GGTCGGATCGGTGGAGCACATCCGCGACCTGGTCAACCTGCAACTGCCGGGTATCACCTTGCTGCCGTTGCCAGTGGCGCCGCGCCAACTGCCGTACCAC GCAGGCTCGACGTATTACGAACTGGACCGTGGCAGCGAGCATTGGCAGCAACTGGGCAATTCCGGTGGTTTTGCCTTCCATATCGCCGGGCAGTTCCCGG GCTTGAACCTGGCCTTCTGGGCGATCCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCGATGCATCCCAATGATGACGACCGCACCCAGTTCATGCCGCGCCCGGGTGGCCGTGCGCCGGAACCCGCGCGTGCCGAACCGGCCCCGCTGTCGA TGCCGGCCGCGCCGATTCTCACCGGCAAAAGCCAGGGCCTGAACCCGCTGGAAAGCGCCGCCGGCCCGCTGTTGGCGCTGTTGACGCGCCTGCGCAACAC CATCGCGCACCCGGCGCCGGCCAGCCTGCGCGCGCAGTTGCTGGCGTACCTGCGCCAGTTCGAAGAACGCGCCGAAGCCGCTGGCGTGGCCCGCAACGAG GTGCTGCTGGCGCGCTACGCGCTGTGCACCGCCCTCGATGAGGCGGTGTTGAGCACGCCGTGGGGCAGCACCAGCGATTGGGGCAAGCAGAGCCTGTTGA TCACCGTGCACAACGAGGCCTGGGGGGGCGAAAAAGTCTTCCAGTTACTCGACCACTGCCTGCAAAGTCCACGGGAGCGCCTGTACCTGCTGGAGCTGTT
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSAGAWGFSELLIDQGLLAQGKLAIVSARGLLPDGTPFNIPQDDLAPSPLNIDDNLRDGLVYL ALPLKRAGARDTVDEGEPLEAARYVSQVREVRDDNAPFENRAPVAVGSRALRLLTAQDGISDYAAVGLVRIKEKRADRALVLDDSYIPPVLDVAASKPLS AFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLIQHFSQLSPLHPERFFSALVSLAGEFSTFSTSSRRPQEYPQYQHDDLALSFAP VMAALREALSMLIDSKATPIPIVEKAYGVHVAMLADKTLLDSASFILVVRADVPGETLRARFGQQSKVGSVEHIRDLVNLQLPGITLLPLPVAPRQLPYH AGSTYYELDRGSEHWQQLGNSGGFAFHIAGQFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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