Pseudomonas sp. LAMO17WK12:I2, D883_RS0128920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCAGGCCGGTGGCATCGAGTGCTACCCGGTAACCGGTGAGATCACCTACGGCCTCGAGCGCCTGGCCATGTACCTGCAGGGCGTGGATTCGGTCTACG ACCTGGTGTGGGCTGACGGCCCGTTCGGCAAAGTGACCTATGGCGACGTGTTCCACCAGAACGAAGTGGAGCAATCGACCTACAACTTCGAACACGCCAA CGTCGACAAGCTGTTCGAACTGTTCGACTTCTATGAAAGCGAAGCCAAGCGCCTGATCGAACTCGACCAGCCGCTGCCGTTGCCGAGCTATGAAATGGTG TTGAAGGCCTCCCATACCTTCAACCTGCTGGACGCCCGTCGTGCCATCTCGGTAACCGCGCGCCAGCAATACATCCTGCGTGTACGCACCCTGGCGCGTT CCGTCGCTCAAGCCTACCTGCTGGCTCGCGCCAAGCTGGGCTTCCCGATGGCCACCCCGGACCTGCGTGATGAAGTGTTGGCTAAGCTGGAGGCTGCACA
|
|
| DNA Sequence for Gene |
>D883_RS0128920
ATGAGTGCTCAAGATTTCCTGGTTGAACTGGGCACCGAAGAGCTGCCACCCAAGGCACTCAATACCCTGGCCGATGCGTTCCTGGCCGGTATCGAAAAAG GCCTGCAGAGCGCCGGCCTGAAATTTGAAGCGAAAAAAGTCTACGCCGCACCGCGCCGCCTGGCCGTGTTGCTGACCGCGCTGGAAACCCAGCAGCCGGA CCGCAGCATCAACCTCGACGGCCCGCCACGCCAGGCGGCTTTCGACGCCGAAGGCAACCCGACCCAAGCCGCACTGGGCTTCGCCAAGAAGTGTGGCGTC GAGCTGAGCGAGATCGACCAGAGCGGCCCGAAACTGCGTTTCAGCCAGGTCATCACAGGCAAGCCCACCGCCAGCCTGTTGCCGACCATCGTCGAAGACT CCCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGGCGCGCGCAAGGAAGAGTTCGTGCGCCCGACCCAGTGGCTGGTGATGCTGCTCGGTGACCA GGTCATCGATTGCACCATCCTCGCCCAGAAAGCTGGCCGTGATTCCCGTGGCCATCGCTTCCACCATCCACAAGCGGTGCGCATCACTTCGCCGGCTAAC TATGCCGCCGATCTGCGTGCTGCCTACGTGCTGGCCGATGCCAACGAGCGTCGCGATCTGATCAGCAAACGCACCGAAGAACTCGCCCGCCTGCAGGAAG GCACCGCCATCGTGCCGCCAAGCCTGCTCGACGAAGTGACCGCGCTGGTTGAATGGCCGGTGCCGCTGGTGTGCTCGTTCGAAGAACGTTTCCTCGATGT GCCGCAGGAAGCGCTGATCACCACCATGCAGGACAACCAGAAGTATTTCTGCCTGCTGGACGTGGACGGCAAGTTGCTGCCGCGCTTTATCACCGTGGCC AACATCGAAAGCAAGGACCCGCAGCAGATCATCGCCGGTAACGAGAAAGTCGTGCGTCCGCGCCTGACTGACGCCGAGTTCTTCTTCAAGCAAGACAAGA AGCAGAAGCTGGAAGACTTCAACCTGCGCCTGCAGAACGTGGTGTTCCAGGAAAAACTTGGCAGCGTCTACGACAAGGCCGTGCGCGTTTCCAAGCTGGC GGCCTACATTGCCCCACGCATCGGCGGTGATGCCGCCTGGGCTGCGCGTGCAGGCTTGCTGTCCAAGTGCGACCTGGCCACCGAAATGGTCGGCGAGTTC CCGGAGATGCAGGGCGTTGCCGGTTACTACTACGCCCTCAACGATGGCGAGGCGGACGATGTCGCGCTGGCGCTGAACGAGCAGTACATGCCGCGTGGCG CCGGCGCCGAGCTGCCGACCACCCTGACCGGTGCGGCCGTGGCCATCGCCGACAAGCTGGATACCCTCGTCGGTATCTTCGGTATCGGCATGCTGCCTAC CGGTAGCAAAGACCCGTATGCCCTGCGTCGCGCGGCCCTCGGCGTGCTGCGTATCCTGATCGACAAGAAACTCGACCTCGACCTGACCCAGGCCGTGGTG TTCGCGGTCGGCCAGTTCGGTGGCAAGGTCAAGCAAGCCGGCCTGGCCGAGCAAGTGCTGGAGTTCGTGTTCGACCGCCTGCGTGCGCGTTATGAAGACG AAGGCGTGGACGTTTCCGTCTACCTGTCGGTACGTGCCCTGCAACCGGGTTCGGCGCTGGACTTCGATCAACGCGTACAAGCCGTACAGGCGTTCCGTAA GCTGCCGGAAGCCGACGCCCTGGCCGCTGTGAACAAGCGTGTGTCGAACCTGCTGGGCAAGGCCGAAGGCCTGGGCAACGCCGATGTCGACCCAGGCCTG TTCGCCGACGCCAAGGAGTTCTCGCTGAATTCTGCCATTGCCAAGGCAGAGAACGCGGTGAAGCCGCTGATCGCCGAACGCAATTACGCCGAAGCCCTGG CACGCCTGGCGACCTTGCGTGAGCCGGTGGATGCGTTCTTCGAAGCGGTGATGATCAATGCCGAAGATGCCGGCGTGCGGAAAAACCGCTACGCCATGCT GGCGCGTCTGCGTGGCCTGTTCGTCAACATCGCTGACATTTCGACACTGAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATGTTGAAACTGCTGATTCTCGATCGGGACGGGGTGATCAACTACGACTCCGACGCTTACATCAAGTCGGTGGCGGAATGGATTCCACTGCCCGGTTC GATCGAGGCCATCGCGCAGTTGAGCAAAGCCGGCTGGACGGTGGCCATCGCCACCAACCAGTCCGGCATCGCCCGCGGCTATTACGACATCGCCACCCTG GACGCCATGCACACGCGCTTGCGCACGCTGGTGGCGGAGCAGGGCGGGGAAGTGGGGCTGGTGGTGTACTGCCCTCACGGGCCGGATGAGGGCTGCGATT GCCGCAAACCCAAGCCTGGCATGTTGAAAACCATTGCAGAACATTACAAGGTGCCCTTGGCTGGGATATGGTTCGTCGGGGACAGCCTCGGTGACCTGGA GGCGGCCAAAGCCGTCGACTCTCAGCCAGTTTTGGTAAAGACCGGGAAAGGCGAAAAGACCCAGGCGAAAAACCTGCCGGTAGGCACCTTGATTTTTGAC
|
|
| Amino Acid Sequence |
>glycine-tRNA synthetase subunit beta
MSAQDFLVELGTEELPPKALNTLADAFLAGIEKGLQSAGLKFEAKKVYAAPRRLAVLLTALETQQPDRSINLDGPPRQAAFDAEGNPTQAALGFAKKCGV ELSEIDQSGPKLRFSQVITGKPTASLLPTIVEDSLNDLPIPKRMRWGARKEEFVRPTQWLVMLLGDQVIDCTILAQKAGRDSRGHRFHHPQAVRITSPAN YAADLRAAYVLADANERRDLISKRTEELARLQEGTAIVPPSLLDEVTALVEWPVPLVCSFEERFLDVPQEALITTMQDNQKYFCLLDVDGKLLPRFITVA NIESKDPQQIIAGNEKVVRPRLTDAEFFFKQDKKQKLEDFNLRLQNVVFQEKLGSVYDKAVRVSKLAAYIAPRIGGDAAWAARAGLLSKCDLATEMVGEF PEMQGVAGYYYALNDGEADDVALALNEQYMPRGAGAELPTTLTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIDKKLDLDLTQAVV FAVGQFGGKVKQAGLAEQVLEFVFDRLRARYEDEGVDVSVYLSVRALQPGSALDFDQRVQAVQAFRKLPEADALAAVNKRVSNLLGKAEGLGNADVDPGL FADAKEFSLNSAIAKAENAVKPLIAERNYAEALARLATLREPVDAFFEAVMINAEDAGVRKNRYAMLARLRGLFVNIADISTLS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|