Pseudomonas sp. LAMO17WK12:I2, D883_RS0127770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00025.25_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGAGAGCCTGGGGCGCAGCGGCGGACAAGCTCATCAGGCCGACAAGGCCAAAAAACGACCAGCGCATGGCGAATGCTCCGTGGTTTGAATCGAAGAT GGGTGAAGCTTGGCCGACGCCGCGGTGTAATACCAGCCCGGCCGAAAGTTTCAGAACTTGACCTTGCCATCGTGGCAAGGTCAAGACTGGGTTCAACCTC ATCAAAGGAGTCATGTCATGCAAATATTCAGCGTTGAAGGAATGACCTGTGGCCATTGCGTTCGGGCCGTGACCCAGGCGGTGCAGAGCCAGGATCCGGC GGCCAGCGTGAAGGTCGACCTGGCGGCTAAAGAGGTGGGCGTCGAAAGCCGCCTGTCTGCCGAGGAAGTGATCAGCCTGATCAGCGAAGAGGGCTACAGC GCCAAGCTCGCCTGACCCATTCAAATAGTTAGCGAGCTATCGTATTCAATGCACCCAAGCGCGGCTAAACTGTCGGGCTGCCGACACACTTGGGTGCCTG
|
|
| DNA Sequence for Gene |
>D883_RS0127770
ATGAACCTTCGCATAATCCTGATTCTGGGCGCCTTGAGCGCCTTCGCGCCGCTGGCGATCGATTTCTACCTGCCGGGCTTTCCTGCCATGGCGACGGCCT TCGGGACCGACGAAAAACATATCCAGTTGACCTTGGCGGTGTATTTCGCCGGCCTGGCCATCGGCCAACTGATCTACGGCCCACTGGCAGACCGCTTTGG TCGACGCGGCCCGCTGCTCAGCGGCGTAACCCTGTTTACCCTGGCGTCCTTTGCCTGCGCGTATGCGCCGTCCCTGGAATGGCTGATTGGCGCACGTTTC GTGCAGGCCCTCGGCGGTTGCGCGGGCATGGTGATTTCCCGCGCCGTGGTCAGTGACAAATGTGATGCGGTGGGCTCGGCCAAGGTGTATTCGCAACTGA TGCTGGTGACCGGCCTGGCGCCGATCCTTGCGCCATTGGCGGGTGGTGTGATGGTCGGGTTGTGGGGCTGGCAGTCGATTTTCCTGGCACTGTCGATCTT CAGCGTGATGGCGGCGATTGCCGTGGCGGTCGGTTTGCCGGAAACCTTTCCGGCCCATCAGCCGCGTCAACCCTTGTCCGGGTCGCTGCGCCGCTACGGC GCGCTGTTGTCAGACCGGGTCTACCTCGGTTACGCCCTGACCGGGGGCATTTCGATTGCCGGGATGTTTGCCTACATCGCCGGCTCCCCGTTCGTATTTA TCAAACTCTATGGCGTGCCCGCCGAGCATTACGGCTGGCTGTTCGGCTCCAACGCCGCCGGGTTCATCCTGGTTGCACAGGTTAACGCGCGGCTGCTGGC CAAGCGTGGCCCGGCGTTTCTGCTGTCGCGCACGGTGTGGGTCTATCTGCTGGCGGCGCTGTCGCTGTTGGGCATCGCGGCCTTGCGCACCGAAGCGTTA TGGCCGTTGCTGGTACCGCTGTTCATCTGTATCGCCAGCCTGGGCTGCATTCTGCCCAACACCTCGGCCTGCGCCATGAGCGGGCAGGGCGCCCGGGCCG GCAGCGCGTCGGCCTTGCTTGGTTGCATTCAGTTTGGCGTGGCGGCAGGGGCGGCTTCGTTGGTGGGCGTGCTGCACGACGGCACGGCGATGCCGATGGC GATGGTCATCAGCTTGTGCGGGGTGTTGGCGGTGACGATTGCGATGTCGACCCAGCGCCTGCAACGGGCAAGGGCCACGCAGGCGCAGGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AATGCAGGTCAGCCAGCGGCGGAGCGTTGCTGGCTGAGTGGAAAACGGTGAGGAGCCTGGATACGGGCTTGCAGGGTATCGGCGAAGGCGCGGGCCTCGG CCTCGCTGCGGAAGGTGAACGCATCGCCGTCGAGGCGAACCTGCCATTTATTGCCGGGGGATTTTGCTAACGCTTTTATCAGGATTTTCATTGCTGACTT CCTCACGTAAAAGAATCGTGGCAAAGGCGGCCAATATAAACCCGAATACGCTCACAAATATGACAAAGATCAACTCTCTGACTAGCGGTGTCGTCCATCA CTCACACGAATAACGGACGACACTGACAGACGTTATCTTCAGAACCCTTCCAGCACGATCTTGCCCTTGGCCTTGCCGCTTTCCAGCAGTGCATGGGCAC GGCGCAGGTTCGCCGCATTGATTACACCGAAGTGTTCGCCCACCGTCGTTTTCAAGATGCCGGCGTCGATCAGTTCGGCCACGCGATTGAGCAGGTTGTG
|
|
| Amino Acid Sequence |
>major facilitator transporter
MNLRIILILGALSAFAPLAIDFYLPGFPAMATAFGTDEKHIQLTLAVYFAGLAIGQLIYGPLADRFGRRGPLLSGVTLFTLASFACAYAPSLEWLIGARF VQALGGCAGMVISRAVVSDKCDAVGSAKVYSQLMLVTGLAPILAPLAGGVMVGLWGWQSIFLALSIFSVMAAIAVAVGLPETFPAHQPRQPLSGSLRRYG ALLSDRVYLGYALTGGISIAGMFAYIAGSPFVFIKLYGVPAEHYGWLFGSNAAGFILVAQVNARLLAKRGPAFLLSRTVWVYLLAALSLLGIAALRTEAL WPLLVPLFICIASLGCILPNTSACAMSGQGARAGSASALLGCIQFGVAAGAASLVGVLHDGTAMPMAMVISLCGVLAVTIAMSTQRLQRARATQAQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|