Pseudomonas sp. LAMO17WK12:I2, D883_RS0123415

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01335 Radical_SAM - - 16 161 2.96188E-11
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 18 149 5.6E-13
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 195 2.5E-27
Pfam PF13353 4Fe-4S single cluster domain - - 14 73 2.5E-8
PANTHER PTHR30352 PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME IPR034457 Organic radical-activating enzymes 3 162 5.4E-20
SUPERFAMILY SSF102114 Radical SAM enzymes - - 9 217 3.79E-20
SFLD SFLDG01094 Uncharacterised Radical SAM Subgroup 6 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein 2 198 0.0
NCBIfam TIGR02495 JCVI: anaerobic ribonucleoside-triphosphate reductase activating protein IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein 1 185 1.0E-61
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 2 198 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.