Pseudomonas sp. LAMO17WK12:I2, D883_RS0122090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00015.15_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTGGAGTCTTCATAGGTCATGCGCGAAGGCACGGTATTGCACGCGCGGATCGGCGGCGTCACGTTGACCACCTTGGCAATGTCCAGGTCCATGCCAT AGCGATACACCTGGACCTGGGGCGCCGGCTTACCGTTTCTCTCGGCGTAGGCGGCCATGGTTTTTTCATTGCGTTCCATCATCAGGGCAAAGGTCCGGTC CCCCCCGCCTTCGGCCAATGCGCCGAATGACAGGACGGCCGTTAGTACACCCACGCCTGCGGTAGAAAAGTTCATCACCTGTTCCTCGACTGAAAGTTCA GTGCCGAGACTAACGAACGAACCCTGACGCGATGTTCACCAGAACATTACTTATTTGTTAGGTGGCGACGAGCTTCCAGAATTGTAATGTTCACGCCACC CAATCGTTATCCACGGTTTGCAACTATCAGCCCGGGCCAGATCAATAAGAACGCCCGCCTCCATAAGAAGCTGATAACTGCCAACACCGAGGAGCGAAAC
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| DNA Sequence for Gene |
>D883_RS0122090
ATGCGGATCCGTTATTACACCCTTCCCCTTTCACTGATCGCCACATTGCCCCTGGCAGCCGTGGCCGCGGAAGACAAACCTGAAGGGTTTATCGAAGGCA GCAGCGTGAACGTGCTGGCGCGCAATTTTTACTTCAACCGCGATGACCGCAAGGGCCAATCCAGCCCCACCGGTAATGGCTATTCCGAAGCCTGGGCCCA GGGACTGATCGGTCAATTCGAATCCGGTTTTACCCAAGGCACCGTGGGGTTTGGCCTGGACGCCTTCGCCATGGTCGGCGTGAAGCTCGACTCGGGCACC GGCCGCAGCGGCGGCAAGGGCTCGTTCGGCGTGCTGCCGGTGGACAGCAACAACCATCCTGAAGACAACTACAGCAAGGTCGGCGGCGCGGCGAAACTGC GGGTATTGGACACGGTGATCAAGGCCGGCGACGTGTTCCCGCTGACCCCCGTGGTGGCCTACGGCGATTCGCGGGTGTTGCCGGAAAGCTTCCGTGGCGT GACCCTGCAGAACACCAGCCTGGAAGGCCTGACCTTGCAGGGCGGGCGTCTGAGCGGCATGAGCCAACCCAACGAAAGCGGCATGAACAAGGGCTTTGCG ACGTTTTACGCAGGCCCCGTGGACTCGCCCTGGATCGGCTATGCCGGTGGTGATTACCAACTCAACAAACACCTGAGCCTGAGCCTGTACAGCAGCCGCC TGAAGGACGCCTGGGACCAGTACTACGTCGGCAGCGCCGCCAGTTACCCGCTGAACGAAGACGTTTCGCTGTTCGGCGACATCAACTACTACAAGGCCGT GGACGAAGGCAAAAAGCTGCTGGGTGAATTCGATAACAGCATCTGGAGCGCCCGGCTCGGCGTGAAGGTGGGCGCCCACAGCCTGGCCGTTTCGCACCAG CGCAACAACGGCGATGACGACTTCGATTACCTGCGCCAGTCGGACTCGATCTTCCTCAACAACTCGATCCAGTACAGCGACTTCAACTCGCCCAAGGAGC GCTCGTGGATGCTGCGCTACGACCTGGACATGCAGCCATTCGGCATTCCCGGCCTGTCGTTCATGACCCGCTACGGCAAGGGCACCGGCGCCGACTACAG CAACGCCAACGCGGTGTATATGCGCCGCGATGCCGCCGGCGATCCGCTCACCGACCAACGCCGCTGGGAGCGGGATATCGAAGCCAAGTACGTGGTGCAA AGCGGCAACTTGAAGGACTTATCGCTGCGACTGCGCCAGGCCACCGTGCGCTCAAGTTCATTCGAGTCCGACCTTGAAGAAGTCCGCGTCATTATCGAAT ACCCACTGGCGGTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGCGCTTACATTCACTTGCCGATGCCCTACATCTGTTCACAGGTTGAAGTCTGTCAGAACTGTAATATCGGCCTCACCTTCTCGTTAAGTTGCACTTT TTATACTGCGCATCGAACACCTCTCATCTCTGCGGCTTTTGTGTAGCTCCTTTGGAACAGAGATGAATTTTATACGCCCCAGCCGGGGCGTTTTTTTTGC GTGCCCGATCAGTGACGAATCGTCGCACCGGCCTGACACGGCTTGACCCTAAAGCTACTTCAGGCTTCAGAGTTTTCCTACAGCCCATTCAAGCCTCTAT GAGGCCATCTCCTTTCGTTTTCCTTGAAGGTAAATCCCCATGCGTATCCTTGTGGTTGAGGACGAGCAGAAAACCGCCGATTACTTGCAGCAAGGCCTGA CCGAAAGTGGCTACGTCGTCGATTGCGCCGCCAGCGGCATCGACGGCCTGCACCTGGCCCGGCAGCACACCTACGAACTGGTGATCCTCGACGTGAACCT
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| Amino Acid Sequence |
>porin
MRIRYYTLPLSLIATLPLAAVAAEDKPEGFIEGSSVNVLARNFYFNRDDRKGQSSPTGNGYSEAWAQGLIGQFESGFTQGTVGFGLDAFAMVGVKLDSGT GRSGGKGSFGVLPVDSNNHPEDNYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTLQNTSLEGLTLQGGRLSGMSQPNESGMNKGFA TFYAGPVDSPWIGYAGGDYQLNKHLSLSLYSSRLKDAWDQYYVGSAASYPLNEDVSLFGDINYYKAVDEGKKLLGEFDNSIWSARLGVKVGAHSLAVSHQ RNNGDDDFDYLRQSDSIFLNNSIQYSDFNSPKERSWMLRYDLDMQPFGIPGLSFMTRYGKGTGADYSNANAVYMRRDAAGDPLTDQRRWERDIEAKYVVQ SGNLKDLSLRLRQATVRSSSFESDLEEVRVIIEYPLAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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