Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCCTGGTATCAACACCGAACCGTTCTGGGGCAAGGATGGTTCGACCATCTACTTCACCTCGGACCGCGGCGGCAAGCCACAGATCTACAAGACCAGCGTT GGCGGTGGGGGCGCGGAACGCGTGACCTTTATCGGTAACTACAACGCCAATCCTAAGCTTTCGGCTGATGAAAAGACGTTGGTGATGATTCACCGTCAGG ATGGTTTCACTAATTTCCGGGTTGCGGCCCAGGATTTGCAGCGTGGAACGGTAAAAATCCTCACAGATACCAACCTTGATGAGTCAGCTACTGTTGCGCC CAACGGCACCATGGTAATCTACGCCACCCGCCAGCAGGGCCGGGGAGTCTTGATGCTCGTGTCCATTAATGGACGCGTAAGGCTCCCGCTTCCTACCGCA CAAGGCGAAGTCAGAGAACCGTCCTGGTCCCCTTACCTGAACTGACGCGGCGCTACAAAAAGAAGTACTTAACACACTGGGGTTCATTAGGAGTTTCACG
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DNA Sequence for Gene |
>D883_RS0114290
ATGGAAATGCTGAAGTTTGGTAAGTTTGCTGCTCTGGCTCTGGCTCTGTCCGTAGCCGTTGGTTGCTCGTCTAAAGGCGGCGACAATGCCGGTGAAGGCG CAGCTGTTGATCCAAACGCTGGTTACGGCGCTAACACTGGTGCAGTTGACGGCTCCCTGAGCGAAGAAGCTGCTCTGCGCGCTATCACCACTTTCTACTT CGAATACGACAGTTCGGACCTGAAGCCAGAAGCCATGCGCGCTCTGGACGTTCACGCGAAGGACCTGAAAGCTAACGGCGCTCGCGTTGTTCTGGAAGGT AACACTGACGAACGTGGTACTCGTGAGTACAACATGGCACTGGGCGAGCGTCGTGCGAAAGCCGTTCAGCGCTACCTGGTACTGCAAGGTGTTGCTCCAG GCCAACTGGAACTGGTTTCCTACGGTAAAGAGCGTCCAGTTGCTACTGGCCACGACGAGCAGTCCTGGGCTCAAAACCGTCGCGTCGAACTGCGTAAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTCGTCATGCGAACGTGCCGTCGTGCTCTAACTGTATTGGCTCTCAGCCTCGCCCCGCTTGCGGTGTGGGCTGCGGTTCCTGTGGAAGACAGCAACTCTG GCTATAACAATAGCGGGAGCAGCTATCCGCCAGCGGGTTATGGCACGAACGGCGCCTATGCTGGGGGGGCGGCTACGTCCGCTCCCTCGGCACAGGGCGA ACTGTTCAACCAGCTGCAACGCATGCAGGATCAATTGGCGCAGCAACAAGGCACCATTGAAGTTCTGCAAAATGAGGTGCGTCAGCTGAAGCAGGAAGGC CTGGAGCGTTACCAGGATCTTGATCGACGTATAGGAGCCGGTGTTACACCTGCCGCTACTCCTGATAATTCTTCTGCCGGTGGCGCGCCCAGCGCGGCTA TCGGTGGTGCAGCAGCAGGGGCCGCCGCTGCGAGCCAAGCCCCTGCCGCCAGCAGTGAACCGGGTGATCCGGCGAAGGAAAAGCTGTATTACGATGCAGC
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Amino Acid Sequence |
>peptidoglycan-binding protein
MEMLKFGKFAALALALSVAVGCSSKGGDNAGEGAAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKANGARVVLEG NTDERGTREYNMALGERRAKAVQRYLVLQGVAPGQLELVSYGKERPVATGHDEQSWAQNRRVELRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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