Pseudomonas sp. LAMO17WK12:I2, D883_RS0114125 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGATCAGCGACGCCGACCAGCCTATGGGGGTGCCGTCGTCCTGCACGACCCGCAAGCCCATGACCTGTTTGCCCGGTGAGCAGCCCTGGTTGAGCACCTC GAACAGCACCATGTACCACCAACTGACCAGGAACAGCAGAAGCGATCCCAGGCCGATACCGATATTGCCGAGCAACGCCAATGGCACCAGCAGCACGCCC ATGATCACTGCGCGTGCGCCGAGGTCGAAGGCAAATGCCAGCGCCCGTGGCACCAGGCCGGCTGGGCGCAGTGGCAGGTCGATGCCCTCCGGGGTCTCGA TCTGGTAGAGGGTGTCCAATGGGGCTGATGGCATCGCGATCCTTGGCAGTGCAGAGCGGCTGGAGACACGGATGCTAACAGTGTCCGTGATGGAAGCAAC TACTCAAGGTTTTGCTGGATGTTTGTACAGTGGAATTGGTGCTGGCCCCGAACACGGCTGAACGCCTAGACTTTGTCGATCTTCAGCACAGGAATAGCCC
|
|
| DNA Sequence for Gene |
>D883_RS0114125
|sbcB
GTGACCACCATTTTCTGGTACGACTATGAAACCACCGGCATCAACCCGCGCAGCGATCGCCCACTTCAGGTTGCCGGCATTCGTACGGACCTCGATCTCA ACGAGGTCGGCCCGCCGGTCAATCTTTACTGCCTGCCCAGCGACGACATCCTGCCCCATCCCGCCGCCTGTGCCATTACCGGTATAACCCCTGGAATACT GGCGGAAAAAGGCCTGGCCGAGGCCGATTTCATGACCCGTGTACATGCCGAACTGGCGGCCCCGGGGACGTGCGGCGCAGGTTACAACACCTTGCGGTTT GACGACGAAATGACGCGCTACAGCCTGTATCGCAACTTTTTCGACCCCTACGCGCGGGAGTGGCAGGGCGGTAACAGCCGCTGGGACCTGATCGATGTGG TTCGCACTGCCTACGCCCTGCGCCCGGAAGGCATCGAGTGGCCGCAGCAGGATGGGCGCGTGACCCTCAAGCTCGAGCGCCTGACCGCCGCCAACGGGAT TGACCATGGCCAGGCCCACGATGCGTTATCCGACGTGCGTGCCACCATCGCCCTGGCGCGCCTGGTGCGCGAGAAGCAGCCCAAGCTGTACGACTGGCTG TTTCAACTGCGCAGCAAGCAACGGGTGATGGACCAGGTGCGCCTGCTGCAACCCATGGTGCATATCTCCGGACGTTTTTCCGCCGAGCGTCATTACCTGG GGGTCGTGCTGCCCCTGGCCTGGCACCCGCGCAACCGCAATGCACTGATTGTCTGCGACCTTGGGCTCGATCCCCAGGGGCTGCTGGACCTGGATGCCGC TGCCTTGCGCCAACGCCTGTATACCCGTCGCGAGGACCTTGCCGAAGGTGAACTGCCGGTGCCGCTCAAGTTGGTGCATATCAACCGTTGCCCCGTGGTC GCGCCCTTGAACGTACTGCGGACCGAGGATCGTGAACGCCTGCAATTGGATATGGATATTTGCCAGGCGCGAGCCCTGCGGCTAACTGACGCACAGGCAC TTTGGCGCGATAAGTTGGCGGTTATTTACGCCGAGGAAGATTTTGCCCCGAGCGCAGACCCGGAACAGCAGCTTTACGAAGGTTTTATCGGGGATCGTGA TCGACGGTTATGTGAGCAAGTCCGGGCGGCGGAACCTGCGCAGTTAGCCAGCCAGCAGTGGCCTTTTGATGATCACCGTTTGCCTGAATTATTGTTTCGT TACCGGGCGCGTAACTTCCCCGATACGCTGAACGGCGAGGAGCTACAACGTTGGAAACTTTTCTGTCAGCAACGTTTGGCAAATCCTGAATTCGGCGCGC CGAATACCCTGGAGGCATTTAATCACGCTCGGCAGGAGTTGGCCGTTAGTGCGACGCCGTTTCAGCAGCAGGTGCTGGAGCAATGGCAGAGATATGCCGA CTCTTTAGCCGCTCGTGTGAATCGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAGCGGTTTGTAGAAAAGACGGTCAATAAAAAACGCCAGCAAGCTGGCGTTTTTAATGGGTTGCGTATCAAGCGCAGACCGGGTGAGGCTTAGCCCAGCA GGGTAGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGGGTTTTGTGGTTGCCGCCTTTGGTTTCAATCACTTCACCGTTGTG CGGGTTTTTGTATTGCTTGACCTTGCGCGCACGCTTGGTACCGGTAGTTTTCACGGCGCCACGGGGTGCTTTAACTTTCGACTCTGGATCCAGCAGCGCG ATGATGTCACGCAGGGATTTGGAGTATTCACCCATGAGGGTGCGCAGTTTGCCTTCGAATTCCAGCTCGGTTTTCAGTTTGTCATCTTGGGACAGGTTCT TCAAACGAGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCACGGTATTCGTTGATCAGAGACATGTGGACTACCTTATGTAGAACGCTGATTGACAGGGA
|
|
| Amino Acid Sequence |
>exonuclease I
MTTIFWYDYETTGINPRSDRPLQVAGIRTDLDLNEVGPPVNLYCLPSDDILPHPAACAITGITPGILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPEGIEWPQQDGRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLVREKQPKLYDWL FQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLAWHPRNRNALIVCDLGLDPQGLLDLDAAALRQRLYTRREDLAEGELPVPLKLVHINRCPVV APLNVLRTEDRERLQLDMDICQARALRLTDAQALWRDKLAVIYAEEDFAPSADPEQQLYEGFIGDRDRRLCEQVRAAEPAQLASQQWPFDDHRLPELLFR YRARNFPDTLNGEELQRWKLFCQQRLANPEFGAPNTLEAFNHARQELAVSATPFQQQVLEQWQRYADSLAARVNR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|