Pseudomonas sp. LAMO17WK12:I2, D883_RS0110965
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCCCCGGCGCTACATCCAACCGTCCCACGTGGTGCGCATCGCACCGATGATCTATGGCGGTTCGTTCCGCCGCGATTCGAAACTGGCGGCCGAGCAC GCGAGCAAAGTGCGCTCGGCCGGCAAGCTGGGCTACTACTGGCAACTCTTCGCGGGGTTGGGCTGGACCAGCATCCACTGGCTGCACAAGATCCGCCAGC CGACCCTGGTGCTGGCCGGGGACGACGACCCGCTGATCCCGCTGGTCAACATGCGCATGCTGGCCTGGCGCATTCCCAACGCACAGTTGCACATCATCGA TGACGGCCACCTGTTCCTGATCACCCGGGCTGAAGCCGTGGCGCCGATCATCATGAAGTTTCTCGAGGAGGAGCGCATGCGGGCCGTGATTCACCCGCGA CCTGCGGTGTAAGGACCACACCGCCGCGCAACTTGCCGAGAACCGACTATGGTTCTGAATTGGCGTGCCTGTTGATGGCTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>D883_RS0110965
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCCACCCCTGCCGCGTTCATCAACGCACAAAACGCGATCACCGGCCTGCGCGGTCGGGATTTGCTGTCGA CCTTACGCAGCGTTGCCGCCCACGGCTGGCGCAACCCGGTGCATACCGCCCGTCACGCCCTGGCCCTGGGCGGTCAACTGGGTCGTGTGCTGCTGGGTGA GACCGTGCACGAGCCCAACCCACGGGACAGCCGCTTCAGCGACCCGACCTGGACGCTCAACCCGTTCTACCGACGCAGCCTGCAAGCCTATTTGAGCTGG CAGAAGCAGACCCGCCAGTGGATCGATGACAGCTCACTGAGTGACGACGACCGCGCCCGCGCGCACTTTGCCTTCGCCTTGATCAACGACGCCGTGTCGC CCTCCAACACCCTGCTCAACCCGCTGGCCGTCAAGGAGCTGCTCAACTCCGGCGGCAACAGTGTGGTGCGCGGCGTGAGCAACCTGTTCGACGACCTGCT GCACAACAACGGCCTGCCGCGCCAAGTGAGCAAACAGGCCTTTGAAGTCGGCAAGACCGTGGCCACCACCCCAGGCTCGGTGGTATTTCGCAATGAGCTG CTTGAGTTGATCCAATACAAGCCCATGAGCGAAAAACAGTACGCCAGGCCGCTGCTGATCGTGCCGCCGCAAATCAACAAGTACTACATCTTCGACTTGA GCCCGGCCAACAGCTTCGTGCAGTACGCCCTCAAGAACGGCCTGCAGACCTTCATGGTCAGTTGGCGCAACCCGGACGTGCGCCACCGCGAATGGGGCCT GTCCACCTATGTGGCGGCGCTGGAGGAAGCACTCAACGTCTGCCGGGCCATCACCGGTGCCCGCGAGGTCAACCTGATGGGCGCCTGCGCCGGTGGCCTG ACCATCGCCGCCCTGCAAGGCCACTTGCAAGCCAAGCGCCAGCTGCGCCGCATCTCCAGCGCCAGCTACCTGGTGAGCCTGCTGGACAGCCAGATCGACA GCCCCGCCATGCTGTTCGCCGATGAGCAAACCCTGGAAGCCGCCAAGCGTCGTTCCTACCAGCAAGGCGTGCTGGACGGCCGCGACATGGCCAAGGTGTT CGCCTGGATGCGTCCCAACGACCTGATCTGGAACTACTGGATCAACAATTACCTGCTGGGCAAGGAACCGCCGGCCTTCGACATTTTGTACTGGAACAAC GACAACACGCGCCTGCCCGCCGCACTGCATGGCGACCTGCTCGATTTCTTCAAGCACAACCCGCTGAGCCATCCCGGCGGCCTGGAAGTGTGCGGCACGC CCATCGACCTGCAGAAGGTCACGGTGGACAGCTTCAGCGTGGCCGGGATCAACGACCACATCACGCCGTGGGACGCGGTGTATCGCTCCACGCAATTGCT CGGTGGCGAGCGGCGCTTCGTGCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCCAACTACGTCGAAAATCCCAAG CTGAGCAGCGACCCGCGTGCCTGGTACTACGACGCCAACCACGTCGAGGGCAGTTGGTGGCCGCAGTGGCTGGCGTGGATCCAGCAGCGCTCGGGCGTAC AGCGCGAAACCCTCACCGCCCTGGGCAACCAGAATTACCCACCCATGGAAGCGGCGCCCGGCACCTATGTGCGAGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAACGATCAGATTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGTGCCTTGCAGTTGTTCAACCAGAAGGGCGAGCCGAACGTGTCGA CCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTCCATGGCAAGGAACCGCTGGTGCTGGGGTTGTTCGAGCGCTTCCA GGGCGAATTGGCGCCGCTGCTCGACCCACCGGCGGACGCGCAACTGCAGGCCCAGGATTACTGGCTGTTCCTGCACCTGATCATCGAACGCATGGCCCAA TACCGGTTTTTGTTCCAGGACCTGTCGAACCTGGCGGGGCGCCTGCCGAAACTGGCCAAGGGCATTCGCAACCTGCTGACCGCACTCAAGCGCACCCTCG CGTCCTTGCTGGCGCGCCTGAAGGCGGACGGGCAACTGGTCAGTGACACCCAGGCGCTGGGCCAGTTGGTGGAGCAGATCACCATGACCCTGCTGTTCTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRSVAAHGWRNPVHTARHALALGGQLGRVLLGETVHEPNPRDSRFSDPTWTLNPFYRRSLQAYLSW QKQTRQWIDDSSLSDDDRARAHFAFALINDAVSPSNTLLNPLAVKELLNSGGNSVVRGVSNLFDDLLHNNGLPRQVSKQAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYARPLLIVPPQINKYYIFDLSPANSFVQYALKNGLQTFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPAMLFADEQTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENPK LSSDPRAWYYDANHVEGSWWPQWLAWIQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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