Pseudomonas sp. URMO17WK12:I12, D882_RS0130200
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCGCTGAAAGACCACTTGGGCTACAAGTTGACTCATCCGTTTCTGGACGTGGCAGACATCGCCCCGCTGCTGTGCCCTCAGGCGCACATTCGCGAGG CCGGTCTGGATGAGTGGATCGACTGGTTCAAACTGGAAGTGTTCGAGCGACATAACGCCAGTGCCGACGCGTTGGCGACGGCTGAGTTGGCGTTGATCCT GTTTAGCCGGGCGCGGCAGCAGCAGATTCATAGTCCGTTGAACTTGCAGCAGCGGTTGAGTCAGTGGAAACGCCGGCAACATGCGCCGTCCTTTTAACTA TGCAGTGACTTTTCTGGCCTCATCGCGAGCAAGCTCGCTCCCACAGGGAGCGTGGCTTGCCCGCGATGAACGATAACGCGGTCGAACTGCATGCCTACCG CCACAATTCGCCCGACCAGCGCCAATTGCTTACCTTCCCCGCCTCTGCCACAATCGCGAACAATTCTCGTTAGTTAACACTTCCCAATCGGTGATGCTGC
|
|
| DNA Sequence for Gene |
>D882_RS0130200
GTGTCGTCAATCCAAAGCCCCCACAGTGAGCTCGTTGGTGCGTTATATCGCGACCACCGCGGTTGGCTATTGGCCTGGCTGCGACGTAACGTGGCGTGCC CGCAGCGTGCCGAAGACCTGAGCCAGGACACCTTTGTACGGTTACTGGGCCGCGATGAGCTGAAAGAACCTCGCGAGCCGCGGGCGTTTCTGGTGGCGAT TGCCAAAGGCCTGCTGTTCGACTACTTCCGCCGCGCCGCGCTGGAACAGGCCTACCTCACCGAACTGATGCTGATCCCCGAAGGCGAACAACCGTCGATC GAGGAGCAGCAGTTAATCCTCGAAGACCTCAAAGCCATCGACCGTTTGCTGGGTCAGCTGTCGAGCAAGGCTCGCGCCGCGTTTCTCTATAACCGCCTCG ACGGCCTCACCCATGCCGAAATCGCCGAACGACTGGGCGTCTCGGTGCCGCGTGTCCGGCAATACCTGGCCCAGGGGATTCGTCAGTGCTACATCGCGTT GTACGGTGAACCGGTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCGGTCAGTTCCAAACCCGTGTCGGCCAAGGTGCTGGATGCAGCGATTGCCTGGCAATTGTCCCTCGACTCCGGCAGCCCGGTGGAGCGCGAAGCGTT CAGCCAGTGGCACGCAGCCCACGAGGAACATGCCCGCGCCTGGCGCCAGTTGGGCATGCTCGACCAGCGTTTCAGCGTCGCCAACGGCCCGGCCCGTACG GCATTGCTGCAATCACGTGAAAGCATTCGCCGCCGCGTGCGCAAACTGGGCAACGGCGTGGCCAGTGTTATCGCAGTGATCGGGCTGGCCTTGTTTGCCG GTGAGCGTTATCTGCCCCTCGACTACTGGCTGGCCGACCAGCGCACCGCCACGGGCGAGCAGCGCACCCTGCGCCTGGCGGATGGCACGCTGCTCAACCT CAACACCCACAGTGCCGTGGACATCCGTTTTGATGAGAAGCGGCGGCGGATCATCCTTCAGGAAGGCGAAATCCTCGTCGAAACCGGTCATGGCGATGCC
|
|
| Amino Acid Sequence |
>RNA polymerase sigma factor
MSSIQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELKEPREPRAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEGEQPSI EEQQLILEDLKAIDRLLGQLSSKARAAFLYNRLDGLTHAEIAERLGVSVPRVRQYLAQGIRQCYIALYGEPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|