Pseudomonas sp. URMO17WK12:I12, D882_RS0128195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCAAGCAAAGCGTCGGCGGTTTACAGCAGAGCCTGCGCACCCGCAGCGAACTGAAAAACGAACTGCGCCTGGCCCAGACCACCGTGCAAGGCTCGC AAAAGAACCCGCTGAAATTCGCCGTCGATGCCGGTGAAGCACTGGGCATTTTGTTGCAGCCGAACAAGCCGGGCCAGTTGCCGGCAGAACAAGCGATCTC CCGCGCGTTCCGCGATTTGCAGGCGCATCAGGTGGCTTTGCTGACCGCCAGCCGCGCCGCCGTTCGCGGCACGCTGGAGCACTTCTCGCCACAGCAATTG ACCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTCGCCACCTCGGGCAGTCGCTGGAGAGCCTACGGTCGTTATCACCAGGCCCTGCGTCAGGACGATG ACTGGAGCGAGCGCCTCTTGGCCCGTGACTTCGCTCAGGCCTACGAAGAGCAGATCCGCCTGATTTCCACCCTACACACCGACCACCAAGGATGATGCGC
|
|
| DNA Sequence for Gene |
>D882_RS0128195
ATGTCTCGCTGCTCGACCGCTTTTTTCAAGACGCTGACGGCGCTCATGGCCCTGGTGCTGTTGGCCGGCTGCTCGTCGCTGTCGCCGTATTCGAAAGTCA CCAAGCTCAACCTGAAACTGACCGCCAGCGATCAGCTGAACCCGGACCTCAACGGGCGTCCGTCGCCGATTGTCGTGCGCCTGTTCGAGCTCAAGCACCC GGTGACGTTCGAAAACGCCGACTTCTTCAGCCTGTATGAACGCGCCAAGGAATCCCTGGCCCCAGACCTGGTGGCCAGCGAAGAACTCGAGCTGCGCCCC GGCGAAACCGTTGAGCTGAAACTCAGCGTGGAGGAGGGCAGCCGCTACGTTGGCGTGCTCGCCGCTTACCGCGACCTGCCGGAAACCAAATGGCGCTACA CCGTGCAAATCACCCCGGTGGAAGTCACCGACGCTGACCTGACGCTCGATCAGGCCGGTATCCGCAATAGCCTCGAAACGCTCGCCAAGGCGGATGACTG A
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCATGAATAACCATAAAGTCATTTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCACTTCCAGCACAACGATCGCTACTACGATCACCAGATGAAGACCCG CACCCAGTTGCTGGGCAGTTACACCTGGGGTTTCCTGAACCTGGACATCGATTTGCAGTTCCTCAACATGGGCAAACTGGTGGTCAGCCAGGCCTCGGGG ATTCTGCCGGACGGCAGCCTGTTCGAACTCGGTGGCAACACCGAACCGCTGGCGCTGGACGTGCCGCCGAACACCGGCAACACGCCGATCTACCTGGCGT TGCCGCTGGTCACCGGTAACCACATCGAGGCGCGCCGTCCGGAGCAATCCGACGTGCTGGCGCGCTACACCGCGTACGAAGCCGAAGTCGCCGACTCCAA CGCCGGGGATGACTCCGCCAGCCAGGTGCGCTGCGGTCGCCCGGACTTCAAATTGTTGCTCGGTGAACAGCAGAGCGATCAGGCCTACGTGAAGCTGAAA
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSRCSTAFFKTLTALMALVLLAGCSSLSPYSKVTKLNLKLTASDQLNPDLNGRPSPIVVRLFELKHPVTFENADFFSLYERAKESLAPDLVASEELELRP GETVELKLSVEEGSRYVGVLAAYRDLPETKWRYTVQITPVEVTDADLTLDQAGIRNSLETLAKADD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|