Pseudomonas sp. URMO17WK12:I12, D882_RS0128170
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGTGCACCAACCAGAACCTGCCAAAAAAACTCAAGCTCGGCGACATCTGCCAGGCCTGTGAAGAGACGCCGGAGTTTCTCAGTTTCCGCAACATCACCC CGGCTACCCCGAGTTATGCGCCGCCGCTGAATCGCGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTTAACTATCTGTCATTGGCCGACGTCAATGC GTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCACGCGGAGAAGGTCAGCAAGCGCCTGCTCGGCGGGCTCAAATCGATCAAA CACCAACACGTCGACCGCCTGCATCGCGGCTTGCCGGTGCGCGGGTTGCGCACCGAGCTGACCATCGACCCGGAAGGCTACATCGGCGAAGGCGACCTGT TCGTGTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCTCAATTCGTACCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCA
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| DNA Sequence for Gene |
>D882_RS0128170
ATGGACACCACGTATGGGCCTTCAGCCGCTGCTTTAAGCGGTCTGACCCGAGGAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGGTTGACC GGCTGCGCGAGGCCCACCCGCACCTGAGTCAGGACGATTTGTACGACCAGCTGGAATTCCAGGCCAACCCGAGCCTGGGTTTCCCTGGCAGCGATGTCGA TCGCGTGGAGTTTTTCCACGAGCACGGGCAGATGCGCGCGCGCCTGCGTTTCAACCTGATCGGCCTGGTCGGTTCCGGTTCGCCGCTGCCGGCGTTCTAC GGCGAACAGGCCCTGGGCGACAGCGAAGACGGCAATCCGACCCGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC GCAAATACCGCTACCGCGCCAGCTTCGAGAGCGGTGCGCTCGACCCGTTCTCCTCGCAATTGTTTGCGTTGATTGGCCTGGGCGGCGAAGAGATCCGCAA GGCCGGCGAACTGAACTGGAAACGCCTGCTGCCATACCTCGGCTTGCTCAGCTTGCGCGCGCACTCGGCGGCGCTGATCGAAGCGGTGCTGCGTTACTAC TTCAAGCACGCCGAGCTGACCATCGAGCAGTGCATCGAGCGCCGCGTGGAAATTCTCGACGAGCAGCGCAATCGTTTGGGTCGCGCCAACAGCCTGCTTG GCGAAGACCTGGTGCTGGGCGAACACGTGCGCGACCGCAGCGGCAAATTCCGCATTCACATCCGCGAACTCGACTGGCAACGCTTTCACGAATTCCTGCC CATCGGTTTCGGCTACCAGCCGTTGTGCGCGCTGGTGCGCTTTACCCTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGTTGCGCCACGAAGAAATC CCGGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCTTGGGTTGGACCAGTTGGCTGGGCCGCGAAAAAGCGGACGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACAGATGACCAATGATCAACGTAGACCTGCAACAACTTATCCAGGCGCTGGACGCCGAAACCCGTCGTGACCTGGAAAGTTCTGCCGAACGCTGCGTC GCCCGTGGCGGCAGCAAGATCCTCGTCGAAGACTTGTTGCTCGGCCTGCTGGAGCGCCCGCAAGGCCTGCTCGCCCGCGCGCTGCAAGATGCCGAAGTGG ATGCCGGTGAACTGAGCGCGGCCCTGCAATCGCGGGTCGAACACAGCGCTTCGCGCAACCCGGTGTTTGCCCCGGAACTGGTGCAATGGCTGCAGGATGC CTTGCTGGTGGCGAACCTCGAACTGGGCCAGACCCAGGTCGAACAGGCCGCGCTGATCCTCGCCTTGCTGCGTAACCCGATGCGTTACGCCGGCAGCCGT TACCAGGCGTTGTTGGCCAAACTGAACATTGATCGCCTGAAAGAATTCGCCCTGTCGCAGAAAGAACAACCGGCCACCGGCAAACCCGCCGTGGCGGGCG
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| Amino Acid Sequence |
>type VI secretion protein
MDTTYGPSAAALSGLTRGIREYSLFQAVLLVVDRLREAHPHLSQDDLYDQLEFQANPSLGFPGSDVDRVEFFHEHGQMRARLRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFESGALDPFSSQLFALIGLGGEEIRKAGELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHAELTIEQCIERRVEILDEQRNRLGRANSLLGEDLVLGEHVRDRSGKFRIHIRELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRHEEI PELRIGEQNACRLGWTSWLGREKADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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