Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACCGAACCGGACGGCATCGTCAGCATCGTCCTGGGTCAGCACCACATCCGCGCGACCACCGGCGAGTTCACCTTCACCTCGAAACTGGTCGACGGCAAAT TCCCGGATTACGAGCGTGTTCTGCCAAAAGGCGGAGACAAGCTGGTACTCGGCGACCGTCAGGCGCTGCGTGAAGCTTTCAGCCGTACTGCGATTCTGTC CAACGAGAAGTACCGTGGCATCCGTCTGCAACTGGCTAACGGTCAGCTGAAAATCCAGGCGAACAACCCGGAGCAGGAAGAAGCGGAAGAAGAAGTGGGC GTTGAATACAACGGCGGCAATCTCGAAATCGGCTTCAACGTCAGCTATCTGCTCGACGTACTGGGCGTGATGACCACTGAGCAAGTTCGCCTGATCCTGT CCGATTCCAACAGCAGTGCGCTGGTGCAGGAATCCGACAACGACGACTCGGCTTACGTTGTCATGCCGATGCGCCTGTAATCATGTTCAGCAGAAGCTAG
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DNA Sequence for Gene |
>D882_RS0127510
ATGTCGCTAAGTCGCGTCTCGGTCACCGCGGTGCGCAATTTGCACCCGGTGACCTTCTCCCCCTCCCCCCGAATCAACATTCTTTACGGCGCCAACGGCA GCGGCAAAACCAGTGTTCTGGAAGCCATTCATCTGCTGGGGCTTGCCCGTTCGTTTCGTAGCAGCCGTCTGTTGCCGGTCATCCAGTACGAGCAATTGGC GTGTACGGTGTTTGGCCAGGTTGAATTGGCTGAGGGTGGACACAGCGCGTTAGGTATTTCACGCGACCGTCAGGGCGAATTTCAGATCCGCATCGATGGC CAGAACGCCCGAAGCGCGGCGCAACTGGCGGAGATCCTGCCACTCCAGCTGATCAACCCTGACAGTTTCCGCTTGCTTGAAGGCGCGCCGAAGATTCGCC GACAGTTTCTCGACTGGGGCGTATTCCATGTGGAACCGCGATTCATGTCCACCTGGCAGCGCTTGCAGAAGGCGCTGCGCCAGAGAAACTCTTGGCTGCG ACATGGTACACTTGACGCCGTTTCGCAAGCGGTTTGGGACAGGGAACTGTGCCAGGCCAGCGCTGAAATCGATGAATACCGCCGCGCTTACATCAAAGCC TTGAAACCAGTCTTTGAACAGACCTTGAGCGAACTGGTCGAGCTTGAAGGCTTGACCCTCAGCTATTACCGAGGCTGGGACAAAGACCGCGAACTGAGTG CCGTACTCGCTGGGTCCCTTCAACGGGACCAGCAAATGGGTCACACCCAGGCCGGACCACAACGCGCTGATTTGCGTCTCAGACTGGGCGCACATAATGC CGCGGACATCTTGTCCCGGGGTCAGCAGAAATTGGTGGTCTGTGCATTGCGGATTGCCCAAGGACACCTGGTGAGCCAGGCCCGACGCGGACAGTGTATT TATCTGGTGGATGACTTGCCGTCCGAATTGGACGAGCACCACCGACGCGCGCTTTGCCGCTTGCTGGAAGACTTACGCTGCCAGGTCTTTATCACCTGTG TAGATCACGAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAGGGCCGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGGCATTGAGCGAAGAAAATACGTACGACTCAACGAGCATTAAAGTGCTGAAAGGCCTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGTGACAC CGACGATGGCAGCGGTCTGCACCACATGGTGTTCGAAGTGGTCGATAACTCGATCGACGAAGCTCTCGCCGGCCACTGCGACGACATCAGCATCATCATT CACCCGGATGAGTCCATCACCGTTCGCGACAACGGCCGTGGCATCCCGGTAGACGTGCACAAAGAAGAAGGCGTTTCGGCAGCCGAGGTCATCATGACCG TGCTGCACGCCGGCGGTAAGTTCGACGACAACTCCTACAAAGTATCCGGCGGTCTGCACGGTGTAGGTGTGTCGGTAGTGAACGCACTGTCCAAAGAACT GATCCTGACCGTTCGCCGCAGCGGCAAGATCTGGGAACAGACTTACGTCCACGGTGTTCCGCAAGAGCCGATGAAAATCGTTGGCGAGAGCGAAACCACG
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Amino Acid Sequence |
>recombinase RecF
MSLSRVSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSSRLLPVIQYEQLACTVFGQVELAEGGHSALGISRDRQGEFQIRIDG QNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQASAEIDEYRRAYIKA LKPVFEQTLSELVELEGLTLSYYRGWDKDRELSAVLAGSLQRDQQMGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQARRGQCI YLVDDLPSELDEHHRRALCRLLEDLRCQVFITCVDHELLREGWQTETPVALFHVEQGRITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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