Pseudomonas sp. URMO17WK12:I12, D882_RS0124660
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00018.18_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCACCATTGGCGAAAATGCTCAAGGTGCGCTCGTCATCATGCTCAGCCAGCGGGTGCTGCTCCGGGGGTACGCAGGGACGGCTCGACCGACGGTCTTAG CGGGTCGGCAGCCTGAACATTGCCGGATATTGAGACATAAGACGAATCCGCTCTCTTAAAGTCACCTCTAGATGGATAAAGATTATGAGAGCCTCTGCGC AAAATTCGAACAGAAGTATGGACGAACTCATCTAGCCAGACTTTAGCCAAGACCGAAAAAAAGCCCTGTGAGTGCGCGGAACTTTTTTTGAGCGGCTCGC TCATCTCGGGCCTCGCAGCTGGATATTTTTTAGACAATGCAGTTAAAAGTTGCTCGAAAAAGAATCAACGCCTACAATTTTTTTTGCTTCTTGCTTTACG TCAGTTTACTTACGAGTAGTAATGAGTAGTATGTACGCCGGCTATTTCCTCACTCTGAGGAGACAGCTAACTTAATAGAAAGTCCTTGAAGGGGAACACG
|
|
| DNA Sequence for Gene |
>D882_RS0124660
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGCATCGAAAGAAACCGAAGCACGTCTGACCGCTA CTGAAGACGCAGCTGCTCGCTCCCAGGCTCGTGCAGACGAAGCTTACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGTGCTCTGCGCATGCTGGACAAAGCTAGCCGCAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAATCCCTCGGGATTGTTATCAAGCCGACCCATTTTTTGGGTCGGCTTTTTTATTGCCTGGTGTTTCCTACCGGCAATAAAAAACCCGCCGACGCGGTGT GCGTCGGCGGGTTGTTTTCAAGCCTTACTGCAACGGATCGAGCGGTGTATTCGACACCATCGGCGCGGAGCCATTCGGCACCGCGATTTCCACCGGCAGG CCATCTTCAGCGGCGACCACGTCACGCACCACATCCCAGTTCATGCGCAGGTTGTTAGTGATGTCTTCACGCTTGAGCATCGCGTTGATCACCGCGGTGT GCTTGTCGACCACCGACGGGTTGCCCTTGTCATCCAGCGGTGTGTGCGCTTCGAGATACACCTTGCCGCCACTTACGCCAAATTTGTACGGATCGTTGAT GATTCGTACCGACGTGCCGACCGGCACCATTTTCGCCATTTCCAGCACGTTATTGTTGAACATGCGGAAGCAGCCGTGGCTGGTGCGCATGCCAATGCCG
|
|
| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSASKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|