Pseudomonas sp. URMO17WK12:I12, D882_RS0124090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00017.17_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACTCCGCCGACCAAACTTGGCGGCCTGCTCAGGCATGGCTTCAATCGTGGCCTGTATTGGGCGGTTGCCCGCGGAATGCTTTGACCCTGCACAGGGAGG AGTGAACGGTGATGAACTCATTGGATGAAACACTGGCGGTCGGTGCGACCGGAACGCCGGGGCTGAACGCCTTGATGGCCAAACTTCAGCCGTTGCTCGA CGGCGGGCGGCTGGACAATATTGTCGATGCGCTGTCGCTGGTCTCGGACATGATCGACCTGCTGGACCCTGCAATGGTAGAAAAACTGGCGCAGCTGTTC GAAAACGCCACGGCGTCCACCTGGATGATTGGCAATGCCGTGCGCCTGGCCAAAGCCGAGGTCAGCGCCGCCGCCCCACCAGGCGCCTATGCGCTGATCA AAATGCTGAACGATCCGGACACACGCAAAGGCGTGGCGGTTGTCCTGAAATCCCTGAATGTCATCGGAAGGCAACTGTCATCGCCAGAGAGGATCACCTC
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| DNA Sequence for Gene |
>D882_RS0124090
ATGAGCGTCAAACTCGAAACGGCAGGGAACGCCTGTACTCACTGGGACGCCAAGGCGTACCAGCAGTTTTCCCGCCTCAGGCAACGACCGGTCAACGAAC TGCTCGACCGTGTCGACATCAAGAACCCCCGTCGCATCTACGACCTGGGCTGCGGCACGGGCATTGCGACACAGCTGCTGGCCAAGCGTTGGCCCCGCGC GCACTTGATGGGTATCGACAGTTCTGAGCAAATGCTTCAGGAGGCCAGAGCCTTGCCGATCAGGGCCCACTGGAAGCAGTGCGACCTGCAAAACTGGCAG CCCGAACAACCCGCCGATCTGCTATTTGCCGCCGCCGTGCTGCATTTCATCGACGATCATCAACGGCTGTTGCCCCGATTGCTCACACACCTCGACCCGG GCGGTTGTCTGGCGGCGCACATGCCTGACTGGCGGGATGCGCCGTGGTATCAGCTGATGCTCGAAACCCTCGACGATGGCGGCCACAACGGTCAGCCGTT GGGCACACCGCAGTTGCGCGAAACCATGACCCGGCGGCCACTGTTGTCGTTGGAGGACTACTACCGATTACTGGCGCCGCTCTGTGCCACGCTGGATATC TGGGAAACCGAGCAGCTACAGGTGGTTGACGGCAAGTCGCCGATTTATGACTGGATCAAGGTGTCGGCGTTAAGGGAGGTCATGCAGGGATTGAAGGATG ACGAACAGGCGAGGTTCATCTATCACTTCATGATGCGGGTGCATGCGCAATATCCGCGGGAGGGGGATGGGCACACGTTGTTTCCGTTCAAGCGGGTTTT CATTGTGGCTACTGTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATGGCATCGCTATCGCGAGCAGGCTCACTCCTACAGTTGACCGAAATCCTCCCGGAAGAATGCGGTCTAATGTAGGAGCGAGCCTGCTCGCGAAGGC CTCAGCTCAGGCACCATCAAAACCCGAGGTCACTCCCGCGATTCAACCCCCAACTCATCCCAAACCGACTCCGCCAAATGGAACGTCGCATTCGCCGCCG GGATGCCGCAGTAGATTGCGCTCTGCATGATCACTTCCTTGATCTCGCCACGGGATACGCCATTATTGGCGGCGGCGCGCAGGTGCAATTTCAGTTCTTC ATTGCGGTTCATGCCAATCAGCATGGCAAGGGTGATCAGGCTGCGGGTGTGGCGCGGCAGGCCCGGGCGGGTCCAGATATCACCCCAGGCGTGGCGGGTG ATCATCTCCTGGAACTCCGAGTTGAACTCGGTCAGGGCGGTCAGGCTGCGGTCGACGTGAGCGTCGCCGAGTACTGCGCGACGGACTTTCATGCCCTCGT
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| Amino Acid Sequence |
>trans-aconitate methyltransferase
MSVKLETAGNACTHWDAKAYQQFSRLRQRPVNELLDRVDIKNPRRIYDLGCGTGIATQLLAKRWPRAHLMGIDSSEQMLQEARALPIRAHWKQCDLQNWQ PEQPADLLFAAAVLHFIDDHQRLLPRLLTHLDPGGCLAAHMPDWRDAPWYQLMLETLDDGGHNGQPLGTPQLRETMTRRPLLSLEDYYRLLAPLCATLDI WETEQLQVVDGKSPIYDWIKVSALREVMQGLKDDEQARFIYHFMMRVHAQYPREGDGHTLFPFKRVFIVATV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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