Pseudomonas sp. URMO17WK12:I12, D882_RS0120040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGTGCAGCAACAGGCTCTGGCCGACTTTGCCGGCGAGGTCGCCGCGCTTGAGCACAGCGCTGATCGCACCACCACTCAGTTCGTCCAGTTGTTTGGCC ACGGCGCCGAGCTTGCGGCCTTCGCCGACGGCGACGACCAGCGTGGCGGTCTTCAACGTTTCTGGGCTAACGCTTTTTACAACCAGTTCCATGTCCGGGT CCCTGAATAATGGTCAACGTGCGTGGGCAAAACGGCGACGCACAGACGCTTGCTTATATAGATGGTAAGACGCAGGTCACGGCCCGCGACAAAGGCCGCA GTTTGAACCTCGCTCCCTGCGCCTGACAACCCTCGGTTGTACGATCTTCAACGCATTGAACGCCAGCTTGAGCATGCGCAGTGACAGGGGCACTCATTCA CAGGATAATGCGCCATCTTTTTCGGCGGCTCTGCCCTGCAGGCTGTCTGATACGTTTGCTTGTTTGGCCGCCTTAGCCTGACAACCCTGGAGTGTCTGGT
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| DNA Sequence for Gene |
>D882_RS0120040
TTGATTGTCTTCCGTTATCTGTCCCGCGAAGTCCTGTTGACCTTGAGCGCAGTCAGCGCCGTGCTGCTGGTCATCATCATGAGCGGTCGCTTCATCAAAT ACCTCGCCCAGGCGGCCTCGGGCCTGCTGGATCCGGGCTCGCTGTTCCTGATCATGGGCTTTCGCCTGCCGGGTTTCCTGCAGCTGATTCTGCCGCTGGG CCTGTTTCTCGGGATCCTGCTGGCGTACGGTCGCCTGTACCTCGAAAGCGAAATGACCGTGCTGTCGGCCACCGGCATGAGCCAGCAGCGACTGTTTGTC ATTACCCTGTTTCCGGCCACGCTGGTGGCGTTGATCGTGGCCTGGCTGAGCCTGAGCCTGGCGCCACAAGGTGCCAATCAGTTCCAGCTGCTGCTGAATA AACAGGATGCGCTGACCGAGTTCGATACCCTCGAGCCGGGTCGCTTCCAGGCGTTGCGTGACGGGACCCGGGTGACCTACACCGAACAGTTGACCGATGA TCGCGTCAATCTGGCAGGTGTGTTCATTTCGCAGAAGAACACCAACTCTGACCAGAAGGATCGCGGGATTTCCGTGCTGGTGGCCGAGAAGGGCCGCCAG GAAATCCGCCCGGACGGCAACCGCTACCTGATTCTCGACAACGGTTATCGCTATGACGGTAATCCGGGGCAGGCCGACTATCGCGCGATCAAGTACGACG AGTACGGGGTATTGCTGCCAAAGCCGGACGTCAGTGACGAAGTGACCGACCGTGATGCGATGAGCACTCGTTCCTTGATGGGGACCGAGGACACGCGCTT GCGCGCCGAGTTGCAATGGCGTCTGTCCTTGCCGTTGCTGGTGTTCATCGTGACGCTAATGGCGGTGCCGTTGTCGCGGGTCAACCCGCGCCAGGGCCGT TTCCTCAAGCTGCTGCCGGCGATTCTTCTTTATATGGCTTACTTGACCATCCTGATTGCCGCCCGTGGCGCCCTCGATAAGGGCAAGATCCCGCCGGCCC TTGGGTTGTGGTGGGTTCACGGGGTGTTTCTGATCATTGGACTCGGGTTGCTTTACTGGGAGCCGTTGCGCCTGAAGATGGCGAGTCGCCGCAGCGCGCT GGAGGTGGCTCGTGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGATCGCTACATCGGTAGCAGCGTATTCATGGCCATCCTGGCGGTACTGGGGATCATTCTCGGCCTGGCGACACTGTTTGCCTTCATCGACGAGATG AGCGAAGTCAGCGATACCTATACGCTGATGGATGCTTCCAGTTACGTCTTGCTGACGGCGCCGCGCCGTCTTTACGACATGTTGCCAATGGCGGCACTGA TCGGGTGCCTGATTGGCCTGGGCAGTCTGGCCAGCAACAGTGAGCTGACCATCATGCGCGCCGCGGGTGTGTCGATCGGTCGTATCGTCTGGGCGGTCAT GAAGCCGATGCTGATCCTGATGGTCGTGGGCGTGCTGATCGGCGAATACGTGGCGCCGGCCACCGAAGTCACGGCACAAGCCAACCGCTCGCTGGCCCAG GGCAGTGGCGATGCGCAGAGCGCCAAGCATGGCTTGTGGCACCGCCAGGGTGATGAGTTCATCCACGTCAACTCGGTGCAGCCCAACGGCATTCTTTACG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAASGLLDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLFV ITLFPATLVALIVAWLSLSLAPQGANQFQLLLNKQDALTEFDTLEPGRFQALRDGTRVTYTEQLTDDRVNLAGVFISQKNTNSDQKDRGISVLVAEKGRQ EIRPDGNRYLILDNGYRYDGNPGQADYRAIKYDEYGVLLPKPDVSDEVTDRDAMSTRSLMGTEDTRLRAELQWRLSLPLLVFIVTLMAVPLSRVNPRQGR FLKLLPAILLYMAYLTILIAARGALDKGKIPPALGLWWVHGVFLIIGLGLLYWEPLRLKMASRRSALEVARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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