Pseudomonas sp. URMO17WK12:I12, D882_RS0118640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAGCAGTGACCATGCCGGCAAAGCTGTTCGCGATCATGGTGAAAGTGGTAACCACTACGGCAGTGATCGCAATGGTGACCGCGGTCATGGCTCAACGA CTTCAGGCATCGCTCACTCCAAAGACACTCGCGGCGTAGCTAAAGCCCGGGCTGTGGCGACTACGACGCCAGGCGATCACAACACCAAAGGGTTGAGCAA AGTCGGGACGTCGGTATCGCCCAAGCTGCATTGATCTGCCGTACCTCGGACTCGGCGCCTGTTTAAATCCGTTCTTCAGGCGCCGCACTCGGCAACCATT AATACCCCCTCAGCGTTATCGCTGATCACCCATATCCAGCATAAATTTCTGACGTGTTCCGAGTAGTGGACAGATTCCTCGTCTACCCTCTGCGAGAGCA TTGTGAACGGCCACGCGCAAAATCAGGTCATTCATTAGTTCGCTAATTCAGCCGATAACGTGGCGTACACCCCTCTTGCATCAACGACCAGCGGGAATTT
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| DNA Sequence for Gene |
>D882_RS0118640
ATGCCGAATAGCCTCGCCTCTATCGTCCACTCCCTCTCTCATCGTTCAAGTGTGTCGCTGGCACGGACTTCACTGTTCAAGTTTGTCGGTCTGTTAGCCG GTGTGTTTTTACTGGCCAGCTTTTCACTGGTTTATCTTGCAAACGATTTAGACCGGACAGAGGAAGTCGAAAGTGCGTTTTACACAAAGAAGGCGGTGCA ATCGCTGGAAAAGTCGCTGCGCTCAGTCGTCAAGGACTACGCATTTTGGGGTGATGCCTACAAGCACTTGCATGCTCAAGTAGACCCGGATTGGGCCTAT GTACGGCAAAACGCCGGGCCAACGCTTTACACCGACTTTGGATTTCAGGGGCTGTTTGTCGTCAACGACGTCAATCGCACGGTTTACTCGGTGATCAAGG GCGAACTGAAATCCGTTGCCGCGTCAGAGTGGCTGGGGGAAGCCATTGCGCCGATGCTGGAAAAGGCACGTGCAGGCGCGGATTCAGAAACACCGACAAC CGCCTTTATCAATATTGGAGGCGAACCCGCGCTGGTCGCGGCAGCCGCTATTACACCGGGAACCGACCCGACCGTGGTGTCTGATGCCCGGCTACCGTCG GTGTTGATTTTCGTCGACATTCTCGACAGCGCCAAGCTTGAGCTATTAGGTAATGATTTCGGGGTCGAGGGCCTGCATGTCGCCACGGCTGATGATCTTG ACGCGACGTCTTTCTTTCCACTGGGAGAGAACGGTGCTGCCGGCAATCTGTCTTGGAGTCCGTCCAGCCCAGGTCTGCGGTTACTGGGAGTAGGGCTGCC ATTGATCGCCATTGCCGCGTTGTTGGTGTGCCTGATGATCTGGGTTATTTTGCGGCGCACCACCGCCAGTGCGGTGGCGCTGGACGCCAGCTACACCTCG CTTCAGAACAGTCAGGACGCCCTCGGCATCAGCGAAGCGCGCTTTCGCGACGTCGTTGAAGCCATCTCGGACTGGGTATGGGAAATAGGGGATGGTGGGC GTTTCACCTATTTGTCCGATCGATTTGAAAATGTCACCGGGCTCTCCCGGGACGCCTGGATCGGTGCGTCGATCAATGATCTGCTGGCCACCGAATTAGG TTTGCTGACCCAATGGTTGAGCATTCCGAACCGTCGTCCGGACATCAGCATCCAGTGCCGCTATATCGATGCCAAGGGGCGAGAGCGCATCACGCGTATC TCGGCCCGGGACATGACGGGCGCAGGGTTCCGGGGCACCGCAACGGATGTGACGGACGAAGTCGAAGCCCGTCGGCGCATCGAATTCCTTTCCCAGCATG ATGCCCTCACCGGGCTCCCCAACCGGACCCGTCTTCAGGAGTTTCTTGACGGTAAACTCAAGGCAATGCCGACGGTGGAACAACCGCTGGTCATGCTCTG CCTGGACCTGGATCGCTTCAAGCCGGTCAATGACTTGCTCGGGCATGCCGCCGGTGACCGCGTGCTCAATGAAGTGTCGAGTCGCCTGGCGGACTGCGTG CGCCACGGCGACCTTGTCGCCCGGGTCGGGGGGGATGAGTTTGTACTGATCCTCAGTGACGTGAGTTCCCAGGAAGAAGTCGAGACCCTGTGTCATCGCC TGATCGAGTCCGTTGAGCGGCCCATAGAGATTGATCAGCAGGAAGTGTTTGTCAGCGCCAGTATCGGCATCGCGATGGCGCCCAATGATGCGTGCGAAGC GACCGAGTTGCTGCGCTATGCGGACATCGCGTTGTACGAGGCAAAGTCGGGCGGCCGTAACACCTGGCGCTTTTATGCAGGCGATATGAACGCCAGAATC ATTGAGCGCCGTCGTCTGGAAAACGACCTGCGTTTCGCCATCAAGCACGGTGAGCTGCGCCTGCATTTTCAGCCACGCTATCGTATCTCGGACGGTCAGA TGGTCGGTGCCGAAGCGCTGGTCCGGTGGCAGCATCCCGAGCGCGGATTAATCCCCCCCGATACGTTTATCCCTATCGCCGAGGAGTCCGGGCTGATCCT TTTCCTGAGCAACTGGGTGATCCAGACCGCATGCCGTTGCGCCGCAAAATGGCCGGAGAATTTGTTCGTCTCCGTCAACCTGTCATCGACCGAATTCAAG CGCGGCAATCTGGTCGAGCGCATTCAGAAAACACTGCACGACACCGGAATCGACCCTGCCCGGGTCGAGCTGGAAATTACCGAAAGCGTGATGCTCGAAG ATGCCACGGGTGCACTTGAGATAATGCGCACACTCAAACGCCTTGGCGTGCGGATCTCCATGGATGACTTTGGAACCGGATATTCATCGTTGAGTTACCT GCGCGCGTTTCCATTCGATGGCCTGAAAATAGACCGCAGTTTCTTGAACAGGCTGGATGAAAGCGAGGATGACCGGGCCATTATCCAGGCGATCGTGGGC TTGGGGCGCGCGTTGGCGCTCACGGTGACGGCCGAGGGCATTGAAAGTGCAGAGCAGATGAGCTTGTTGAAAGCGGTGGCGTGCGATGAAGGCCAAGGCT ATTTCCTGAGCCGGCCACTTGATGTGAATACGTTTAATGCGTTGGTCGGCGTCAAAGGCAGTGCAGTCAGCGCCAGCAACGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGTTGGGAAATACAGTCCAAAAACGCGCCATACGGACCGATCGCGCGCGGATTTTCATTGGTGGCCAATCCGTCATATTCAGTATTCCTTCAATACAGA GAGTGGGCAGCCCAATGCTTATGAATAAGGCTGCACCGTGTTTCAACGTCTTTTGTGTTCGCTGTCCGTTTTGAGCCTGTCTGTCGCCGCTGCCCAGGCT GCCGAGACCAGCACCTTGGCAGGCGGGGATGACAGGATTGTGAAGGTGTGGGCGGAGCGGGCATCAGCATGTCGTCAATGACTTCCACGCCATACAAACG TAATCTTGCCGGCTCGCGTTCCATGACAAGAAAAAAAAACAGGAGTCATTGATGCAACCGATTCGTCTCGGCCTGGTGGGCTACGGCAAGATTGCCCAGG ATCAACACGTTCCCGCTATTAACGCCAACCCCGCGTTCCAGTTGGTGTCTGTCGCCACCCAAGGGCAACCCTGCGCTGGGGTAGAGAATTTTCAGTCCTT
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| Amino Acid Sequence |
>diguanylate cyclase
MPNSLASIVHSLSHRSSVSLARTSLFKFVGLLAGVFLLASFSLVYLANDLDRTEEVESAFYTKKAVQSLEKSLRSVVKDYAFWGDAYKHLHAQVDPDWAY VRQNAGPTLYTDFGFQGLFVVNDVNRTVYSVIKGELKSVAASEWLGEAIAPMLEKARAGADSETPTTAFINIGGEPALVAAAAITPGTDPTVVSDARLPS VLIFVDILDSAKLELLGNDFGVEGLHVATADDLDATSFFPLGENGAAGNLSWSPSSPGLRLLGVGLPLIAIAALLVCLMIWVILRRTTASAVALDASYTS LQNSQDALGISEARFRDVVEAISDWVWEIGDGGRFTYLSDRFENVTGLSRDAWIGASINDLLATELGLLTQWLSIPNRRPDISIQCRYIDAKGRERITRI SARDMTGAGFRGTATDVTDEVEARRRIEFLSQHDALTGLPNRTRLQEFLDGKLKAMPTVEQPLVMLCLDLDRFKPVNDLLGHAAGDRVLNEVSSRLADCV RHGDLVARVGGDEFVLILSDVSSQEEVETLCHRLIESVERPIEIDQQEVFVSASIGIAMAPNDACEATELLRYADIALYEAKSGGRNTWRFYAGDMNARI IERRRLENDLRFAIKHGELRLHFQPRYRISDGQMVGAEALVRWQHPERGLIPPDTFIPIAEESGLILFLSNWVIQTACRCAAKWPENLFVSVNLSSTEFK RGNLVERIQKTLHDTGIDPARVELEITESVMLEDATGALEIMRTLKRLGVRISMDDFGTGYSSLSYLRAFPFDGLKIDRSFLNRLDESEDDRAIIQAIVG LGRALALTVTAEGIESAEQMSLLKAVACDEGQGYFLSRPLDVNTFNALVGVKGSAVSASNV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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