Pseudomonas sp. URMO17WK12:I12, D882_RS0116870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACAAACTCTACCTGGCGACCAAGGCCAGCAAGCTCGACCACATGATGGGCAACGAGCATCAGGGCGAGGCGGATCGGGCGTGACCCGCGGTCAGGTTC GGCGGCGGTTGTCGTTCAGTTGGTGGCAATACCTGGCGCTGGCCTTGTTGCCGTTGTTCGTGATCAATGGCGTGTTCGGCCAAGGCGAGGCGATCCTGCC GGTGCTGGCGATGCCGTTGTTCATCGCAGGTGTGGCGTCGATGTTTGTCAGCCTGAAGTTTTTCGGTGGCTACAAGCACGCCCTGATCGCGACGCAAAAA GCCCTCGATACGCCCGAAGAACCCGCCGCCTGGATCGTCCTGGCCGCCAAGCGACGTACCGCGTTCCTGGCGGCTGCATTGCCGGCCTGGATTGGCGCGC TGGCGGTGTTCGTCGGCCTCGAAGCCGTGCCGTTGGTGTTGCTGGCGCTGTCGACCACGGTGCTGTTCTACCTCTACCGTATTCCGCGTCAACTCGGCTG
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| DNA Sequence for Gene |
>D882_RS0116870
ATGCGCCGGGCCTGGCTGGCGGTATTGCTATTGGCCGCCAGCGGCTCGGCGGTTGCCGTCGAACGGGTCGTCAGTCTGGCGCCGTCCCTCTCTGAAATCG TGGTTGAACTGGGCTCAGCCGACCTGCTGGTCGGGGTGCTGGATGCTGGTGAACGCCCGGCCGAACTGCAAGACCTTCCTTCCGTTGGCCGCTATGGTCA GTTGGACATGGAGCGTTTGCTCAGTCTCAAACCCGATTTGCTGCTGCTCTGGCCGGGCAGTGTTGGCCCCGCGCAGCGTGAGCAGCTCAAGCACTTGAAC ATTCCCACCTACGTCGCCGAACCCCACACGCTCGACCAACTCGCTGCACAAATCGAAGCCATCGCCACGCAACTCGGCCGGCCCGAACGGGGCGTGACGT TGGCGACTGACCTGCGGCAAAAACTGGATAACCTGCGCCAGCGTTATCGGCGGGACGAGCCTCTGCGGGTGTTTTATCAGGTCTGGGATCGGCCGCTGTA CACCGTGGGGGGGGGGCAGATCATCAGTGATGCGCTGGAAGTGTGTGGGGCGCGCAATGTGTTTGCCGACCAGACATTGCCGGCGCCGCAGGTCAGTGTC GAGGCGGTGTTGCAGCGCAATCCCGAGGTGATTCTGGCCAGTGATCAGGCCCAGCTCGACGCGTGGAAGGCGTGGCCGCAGGTGGCGGCGGTGACGCGGG GGCAATTGCTGCTGGTGTCGGACAAGGGGCTGGAGCGGCCGAGTGGGCAGATGGTCGAGGCCACTGCGAAGCTTTGCCAGCTTATCGCACCGGACCGCTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCGAGGCGCGGCCATCATGGGCAAGCCTTGACACCACTGACTTCAGATCAGATTTCCGGTGTCCAGGTCACCCCGAACATCAACGCCCGACCTTCCTC GCGATACCCATATTCACTGCCGTCATGGCTATACAGCGCCCGGCTATAGCCTTTATCCAGCAGGTTATCGAGCTTCAGCTCAAGCTTGATTTCACGGTCG AGCTCCCAGCTACTGCGCAACCCTAACAAGGCGTATCCACCCAACGGCTGTTGATTGTTCAGGTCGTCATAGCTGCTGCTGACTGCTTGCCAGCTCGCAC CAAGGCCCAGGCGATCAAATTGTCGATCCAGGTCCAGGCTCAATGTCCGCCGTGCACGACGCGCCAGGGTATGGCCGGTATCGCGGTCGCGCGGGTCGAT GATCGCCACGCCAAGGTTGCTTTGCCAGCCGAACAGTTCCTGTTTCAGTGCGGCTTCGAAACCGTTGATCCGCGCCGACGCCACGTTCTCTGGCCGCGAG
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| Amino Acid Sequence |
>iron-hydroxamate ABC transporter substrate-binding protein
MRRAWLAVLLLAASGSAVAVERVVSLAPSLSEIVVELGSADLLVGVLDAGERPAELQDLPSVGRYGQLDMERLLSLKPDLLLLWPGSVGPAQREQLKHLN IPTYVAEPHTLDQLAAQIEAIATQLGRPERGVTLATDLRQKLDNLRQRYRRDEPLRVFYQVWDRPLYTVGGGQIISDALEVCGARNVFADQTLPAPQVSV EAVLQRNPEVILASDQAQLDAWKAWPQVAAVTRGQLLLVSDKGLERPSGQMVEATAKLCQLIAPDR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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