Pseudomonas sp. URMO17WK12:I12, D882_RS0110705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAACCAGGTCAACCCGAAAACCGGCACCATCCGTGGTCGCGCAGTCTTCGACAACGCAGACGGCAGCTATACCCCAGGCCTTTATGCGCGTCTGAA ACTGGTCGGCAGCGGCACCTACTCCGCCGTGCTGATCAATGACGAAGCGGTCGGTACCGATCTGGGCAAAAAATTCGTACTGGTGATGGATGCCGACAAC AAAACGGCGTACCGCGCCGTCGAACTGGGACCAAAGATCGAAGGTTTGCGCATCGTGCGCACCGGCCTGAACAAGGATGACACCGTCATCGTCAAGGGGC TGCAACGGGTTCGCCCTGGCTCGCCGGTCACCCCTGAAGTGATCCCGATGGCCAGCGAACAAACCCTCGCGGCCTTGGCTCAACAACGACAAGCGCTGGA AGCCAGCAACCTGCCCCAAGTCGCACCTGCCAAGGTCGCGCCGGGTGAGGTTGTGAAACTGGCTGCTGCGACTCCACGCGGTTAAGGGACAACGACTCCG
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| DNA Sequence for Gene |
>D882_RS0110705
ATGAATTTTTCCCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTGCTCTCGCTGTTGATCCTGATCGCCGGCGCTATCTCGCTGTTCCAGTTGCCAA TCAGTGAATACCCGGAGGTGGTGCCGCCGACCGTTGTGGTCCGCGCCAACTTCCCGGGTGCCAACCCTAAAGTCATCGGTGAAACGGTGGCCGCTCCGCT GGAGCAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGTCCACCGCTGACGGCAAAATCACCCTGACCATCACCTTCGCGCTGGGCACT GACCTGGACAATGCGCAGGTGCAGGTACAGAACCGGGTCACCCGGACCGAGCCGAAACTTCCAGAAGAAGTGACGCGCATCGGTATCACTGTCGACAAGG CTTCGCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTTTACCTGTCCAACTATGCCCTGCTCAACATCAAGGATGA GCTGGCGCGTCTGGGCGGGGTCGGTGATGTGCAATTGTTCGGCATGGGCGATTACTCGCTGCGCGTCTGGCTCGATCCGAACAAGACCGCTTCGCGTAAC CTGACCGCCACCGATGTGGTGACCGCGATTCGTGAGCAGAACCGTCAAGTGGCCGCCGGTGCACTGGGCGCTCCTCCTGCGCCAAATGCCACGGCTTTCC AGCTGTCGGTCAACACTCAAGGTCGTCTGGTTTCTGAAGAAGAGTTCGAGAACATCATCATTCGCTCCGGCGATAACGGTGAAATCACTCGCCTCAAAGA CATTGCCCGCGTTGAACTGGGCTCCAGCCAATACGCCCTGCGCTCGTTGCTGAACAACCAACCGGCGGTGGCGATCCCGATCTTCCAGCGCCCTGGCTCC AATGCGATCGAAATCTCCAACGAAGTGCGCGACAAGATGGCCGAGCTGAAGAAGAACTTCCCGGAAGGCATGGACTTCAGCATCGTCTACGACCCGACGA TCTTCGTTCGCGGCTCCATCGAAGCCGTTGTTCACACCCTCTTCGAAGCACTGATTCTCGTTGTGTTGGTGGTGATTCTGTTCCTGCAAACCTGGCGCGC CTCGATCATTCCATTGGTAGCCGTACCGGTGTCGCTGATCGGCACGTTCGCGGTGATGCACTTGTTCGGCTTCTCGTTGAACGCCCTGTCGCTGTTCGGG TTGGTACTGGCGATCGGTATCGTGGTGGACGATGCCATCGTGGTGGTGGAGAACGTGGAGAGGCACATCGAGCTGGGAGAAACGCCCGTAGAAGCCACCA AGAAAGCCATGCGGGAGGTGACCGGGCCGATCATCGCGACGGCGCTGGTGCTGTGTGCGGTATTTATCCCGGCGGCGTTCATTTCCGGACTCACCGGCCA GTTCTACAAACAGTTTGCCCTGACCATTGCCATCTCGACCGTGATCTCGGCGTTCAACTCGCTGACACTGTCCCCTGCCCTGGCCGCCGTGCTGCTCAAG AGCCACAGTGCGCCGAAAGATCGCTTTACCAAAGTGCTTGATAAACTGTTGGGCGGTTGGCTGTTCCGTCCGTTCAACCGGTTCTTCGAACGCGCCAGCC ATGGCTATGTCGGCACCGTAGCCCGGGTTATCCGCAGCAGCGGTATTGCCCTGCTGTTGTACGCAGGCCTGATGGTGCTGACCTTCTTCGGTTTCGCCCA CACCCCGACCGGCTTCGTACCCGGCCAGGACAAACAATACCTGGTGGCCTTCGCGCAACTGCCGGACGCTTCGAGCCTGGACCGTACCGAAGACGTGATC AAACGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGCGCAGTGGCCTTCCCCGGCCTGTCGATCAACGGCTTCACCAACAGTCCTAACGCCG GCATCGTGTTCGTGACCTTGAAGCCGTTCGACGAGCGTAAAGACCCGAGCATGTCCGCCGGTGCCATTGCCGGTGCCTTGAACGGCCAGTTCGCCGGGAT TCAAGAAGCCTACATGGCGATCTTCCCGCCGCCGCCAGTACAGGGTCTGGGCACCATCGGTGGTTTCCGCCTGCAGATCGAAGACAAGGGCAACCTCGGC TACGACGAGCTGTACAAAGAAACCATGAACATCATCAACAAAAGCCACAACGTGCCGGAACTGGCCGCCCTGTTCACCAGCTACACCGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGGGAAAAAGCCAAGACTCATGGCGTGGCCGTCAGTGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTTGGTCGTACCTACCAGGTCAACGTTCAGGCTGAACAACAATTCCGTCTTGAACCGGACCAGATCGGTCAGCTGAAAGTGCGC AACAACAAAGGCGAAATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGGCCGGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGCGCCGCCGCCCCGGGCTACAGCTCTGGCCAGGCCGAAAAAGCCATCGAGAAACTGCTCAAGGATGAACTGCCGAACGGCATGACCTACGA ATGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACCGCCCTGTTCGTCTTCCCGCTCTGCGTTCTGCTGGCGTTCCTGGTACTCGCGGCTCAG TACGAAAGCTGGAGCCTGCCAATGGCAGTGATCCTGATCGTACCGATGACCTTGCTGTCGGCCATCACCGGTGTGATTGCTTCGGGTGGAGACAACAACA TCTTCACCCAGATCGGCTTGATCGTACTGGTGGGGCTTGCGTGTAAGAACGCGATCCTGATCGTCGAGTTTGCCAAGGACAAACAGCAGGACGAAGGCCT CAACCCGCTCGCTGCGGTGCTGGAAGCTTGCCGCTTGCGTCTGCGGCCGATCCTGATGACGTCCTTCGCGTTCATCATGGGTGTCGTGCCTCTGGTGTTC TCCAGCGGTGCCGGTGCCGAAATGCGTCACGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGTTGCTGACGCCGGTGT TCTACGTATTGATTCGCAACTTTGTGGAGCGCGGTGAAAAGCGCAAGGCGGCCAAGGCGCTGAATCTTCAAAAGCAACTGGAGTCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTGAAAGCCTTTCTTCCGAGCCTGCTGGTACTGGCCCTGAGTGCCTGCGCCGTCGGCCCGGACTACAAGACCCCTGCGACTGAACCGGCGCATATCAC CACGGCTACCGATGGCGCTGCCGGCCAGAAAAACTTCGACCGCTCGCACTTCGAAGGCATCTGGTGGCAGCAGTTCGAGGACCCGACCCTTAATCAGTTG GTGACTCAATCGCTGCAAGGCAACCGTGATTTGCGCGTGGCCTTCGCCCGCTGGAAAGCGGCCCGGGCGATTCGCGATGACATCAGCAACGACGCCATGC CGACCATCACCAGCCGGGCCAGCAGTGAACTGGGCAAAGGGCAAATCCCTGGCCAGACCACCAAACGGGTCAACAGCGAACGCTACGACCTGGGCCTGGA CATGGCGTGGGAGATCGACCTGTTTGGCCGTATCCAGCGCAACCTGGAATCGGCCAACGCCGAACAGCAAGCCATCGAGGCCGATCTCTACCAACTGCAA
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| Amino Acid Sequence |
>transporter
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISNEVRDKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERHIELGETPVEATKKAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHSAPKDRFTKVLDKLLGGWLFRPFNRFFERASHGYVGTVARVIRSSGIALLLYAGLMVLTFFGFAHTPTGFVPGQDKQYLVAFAQLPDASSLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQFAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDKGNLG YDELYKETMNIINKSHNVPELAALFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPMAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQQDEGLNPLAAVLEACRLRLRPILMTSFAFIMGVVPLVF SSGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEKRKAAKALNLQKQLESQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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