Pseudomonas sp. URMO17WK12:I12, D882_RS0108035 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCTACCGTGAGTTGGCGCGCAGTGTTCACCCGGACCGCTTTGCTGACGCTTCCGAGCGTGAGCAGCGGTTGGCGCTAGAGCAATCCGCGAGCCTCAA CGAGGCCTACCAGACGCTCAAAAGTCCGCCCAAGCGCGCGCGTTACTTGCTCGCCTTGAACGGTGGTGAGCTGCCGCTGGAGGTCACGGTGCATGATCCG GAGTTTTTGCTGCAGCAGATGGAGCTGCGTGAAGAGCTCGAAGACCTGCAAGACAGTGCTGATCTGGCCGGTGTTGCAGCGTTCAAGCGTCGCTTGAAAA CCGCCCAGGATGTACTGAACCAAAGCTTCGCGGCTTGTTGGAATGATGCGGCGCACCGTGAGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGA CAAGCTCACCTACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGCTCCGGTCGCACGCCTGATATACAGATAAGTCCTGATACCA
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| DNA Sequence for Gene |
>D882_RS0108035
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGTCGTCTGGCTGTGGGGATCGACTTGGGCACTACCAATTCGCTGGTCG CTGCGTTGCGCAGTGGTCTTTCCGAGCCTCTGGCCGACGCTGACGGGCAGGTCATCCTGCCGTCTGCCGTGCGTTATCACGCAGATCGCGTCGAAGTCGG CGAGTCCGCCAAACTGGCTGCCGCCACAGATCCCTTGAACACCGTGCTGTCGGTCAAGCGCTTGATGGGTCGTGGTCTGTCCGACGTCAAGCAATTGGGC GATCAACTGCCGTACCGCTTTGTCGGTGGCGAGTCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCGGTCGAAGTCTCCGCCGATATCC TCAAAGTGCTGCGTCAGCGCGCTGAAGCGACCTTGGGTGGCGAGCTGGTCGGCGCGGTGATCACCGTTCCCGCCTATTTCGATGATGCGCAGCGTCAAGC CACCAAGGACGCGGCCAAACTCGCCGGTCTGAACGTGCTGCGTTTGCTCAATGAACCAACCGCCGCCGCTGTGGCTTACGGTCTGGATCAACACGCTGAA GGCCTGGTCGCCATTTATGACCTGGGCGGCGGCACCTTTGATATTTCGATTCTGCGCCTGACCGGCGGCGTGTTTGAAGTTTTGGCTACCGGCGGCGACA GCGCGCTGGGTGGCGATGACTTCGATCACGCGATCGCTGGCTGGATCATCGAGAGCGCCGGTCTGTCCGCCGACCTCGATCCGGGGGCGCAGCGTCAACT GTTGCAAACGGCTTGTGCCGCCAAAGAAGCGCTGACCACCGCCTCGTCGGTTGAAGTGGCTCATGGCGGCTGGAAAGCCGAGCTGACCCGCGAAGCCTTT GATGCGCTGATCGAGCCGATGGTCGCTCGCAGCCTGAAAGCCTGCCGCCGCGCCGTGCGTGATTCGGGTGTTGAGCTGGAAGAAGTGCACGCGGTGGTCA TGGTCGGTGGTTCGACGCGTGTGCCTCGCGTTCGCGAAGCGGTCGCGGAAGCCTTTGGTCGTCAGCCGCTGACTGAAATCGATCCGGATCAAGTGGTGGC CATCGGTGCCGCGATCCAGGCCGATACGCTGGCTGGCAACAAGCGCGATGGCGATGAGCTGCTGTTACTCGACGTGATTCCGTTGTCCCTGGGGCTGGAA ACCATGGGCGGCCTGATGGAGAAGGTGATTCCGCGCAACACCACCATTCCCGTCGCTCGCGCCCAGGACTTCACGACTTATAAAGATGGCCAGTCGGCCA TGGCGATCCACGTATTGCAGGGCGAGCGCGAGCTGATCAGCGACTGCCGCTCCCTGGCGCGTTTTGAATTGCGTGGCATTCCGGCGATGGTGGCCGGTGC GGCGAAGATTCGCGTGACCTTCCAGGTCGATGCTGACGGTCTGCTCAGCGTTTCGGCTCGTGAATTGGGTTCGGGCGTTGAAGCGAGCATTCAGGTCAAG CCGTCCTACGGTCTGACCGACGGCGAAATCGCCAAAATGCTCAAGGATTCGTTCCAGCACGCCAATGACGATAAAGTCGCCCGTGTACTGCGTGAGCAGC AAGTCGATGCACAGCGCCTGATCGAGGCGGTGCAGGCCGCCCTTGATGTCGACGGTGAGCGCCTGCTCGACGCCGAAGAGCGCATGGTCATCGAGTTGCA GATGCAGGAACTGGCCGAACTGATGAAAGGTACCGATGGTTACGCCATCGAGCAGCAGACCAAGCGTCTGTCGCAAGTGACCGATGCCTTTGCTGCCCGC CGCCTGGACTCGACGGTGAAAGCCGCGCTGGCGGGGCGCAACCTGAACGAGATTGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGATGCCGCAGGTCATTTTTCTGCCACACGAGAAGTTTTGCCCGGACGGCATGGTTGTAGAGGCTGAGCCCGGCATTTCCATCCTCGAACTGGCGCACGA ACACCACATCGAGATGGAAAGTGCCTGTGGTGGCGTCTGTGCCTGCACCACGTGTCATTGCCTGATTCGTGAAGGCTTTGATTCGCTGGAAGAGGCTGAC GAGCTGGAAGAAGACTATCTTGATAAGGCTTGGGGGCTGGAAGCTCAGTCCCGCCTGGCGTGTCAGGCCAGAGTCGGCACGGAAGACCTGACCGTCGAAA TTCCGAAATACTCGCTCAACCACGCAGCCGAAGCGCCGCACTGATTCAAGGAATTGTCATGAGTCTCAAGTGGACTGATGTGCTGGAGATTGCGATCCAA CTGGCTGAAAGCAAGCCCGATGTTGACCCTATGTCGGTCAACTTCGTCGATCTGCGCAAATGGGTTATGGAATTGCCCGATTTCGACGACAAGCCTGAGC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADADGQVILPSAVRYHADRVEVGESAKLAAATDPLNTVLSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAEATLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIAGWIIESAGLSADLDPGAQRQLLQTACAAKEALTTASSVEVAHGGWKAELTREAF DALIEPMVARSLKACRRAVRDSGVELEEVHAVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGDELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQSAMAIHVLQGERELISDCRSLARFELRGIPAMVAGAAKIRVTFQVDADGLLSVSARELGSGVEASIQVK PSYGLTDGEIAKMLKDSFQHANDDKVARVLREQQVDAQRLIEAVQAALDVDGERLLDAEERMVIELQMQELAELMKGTDGYAIEQQTKRLSQVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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