Pseudomonas sp. URMO17WK12:I12, D882_RS0107005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTGCTGTCCTACTCTTCCGGGTGCGGAGGGACTAAGGGCGCAATGCTGACTGATGTTGCGGCGGTGGCACACACCGAGGGCGTGATCGACTGAAAGCG ACTGGATGTTTGATGCTTGAGGGAAGAGCGGGAAAAGCGGGGATTCAGAGGAGGGGGTGTGAAGGCGTTTTTGACAACATTCGAACTATTTTGTGCTAAT TAGCAAAACTTGAAATTCATCGACGCACAGTTTTTTGCGCAGACGCTGGGAACGGTTAGTCGCCATTGGAACAATCCTCATAAGTAATAACGGGCGGCAC TTTAGCAGTTTAAGCCGCTAATTGCCCGACTCTCTGGGGGGCATCGCTGACCGCCGGTAAAAAAATAGCAGATTAGAAGGCCATGGCACGGCACACACTT TCAAGCCTTGGGGCATAATGCCGACACTTTCATGACCACTGAGGGATTTTATCGCCATGCCCTCGTCTTTTTCCCCCTCGGCTGTAGGGTTTTATTACAC
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| DNA Sequence for Gene |
>D882_RS0107005
ATGATCAAGTCTTTGCGTCCATTGTTGCTGGCCAGTTTCATTCTTCCGCTGGCCCTCTCCGTCTCCGCCGCCCCGATCAACACTGCGCTCACGCCTAACG TCGAAAAAGCCCTCAAGGCCAGCAAGTTGCAGGACAGCGCCCTGTCACTGGTGATGATTCCGCTCACCGGGCCGGGCACGCCGACCGTTTACAACGCGGA CGTTTCGGTCAACCCGGCCTCGACCATGAAGTTGGTCACCACCTATGCCGCGCTGGAAATGCTCGGCCCGAACCACCAGTGGAAAACCGAGTTCTACACC GACGGCACCCTCAGCGGCGGCATTCTCAATGGCAACCTCTACCTCAAGGGTGGCGGCGATCCGAAGCTGAACATGGAGAAGCTCTGGCTGCTGATGCGTG ACCTGCGCGCCAACGGCGTGACGCAAATCACCGGCGACCTGGTGCTGGACCGCGGTTTCTTCGTACAACCGCAGTTGCCCGAATTCAATGACGACGGCAA TGACGAGAACAAGCCGTTCCTGGTCAAACCCGACTCGCTGATGGTCAACCTCAAGGCCCTGCGTTTTGTCGCGCGTAACGACGGCGGTCGGGTATTGGTG TCGGTGGAACCGCCGATTGCCAGCATTCGCATCGAAAACCAGGTCAAGGCCGTCAATTCCAAGCAGTGCACTGGCGGTGTGCGCTACAACCCGGTGACCC AGCCGGATGGCAGCATGACCGTAACGGTCGGCGGCCAGTTGGGCGATGGCTGCAGCTCGCAGACCTATCTGTCGCTGCTTGACCACGCGACCTACACCGC CGGCGCCGTGCGCGCCATCTGGAAGGAGCTCGGTGGCAGCATTCAGGGCAAGGACGTGCTGGCGGCCACTCCGGGCAATGCAAAACTTCTGGCCCGGGCT TACTCGCCGGATCTGGCGGAAATCATCCGCGACATCAACAAATACAGTAACAACACCATGGCGCAGCAGCTGTTTCTGAGCCTGGGCCAGAAATTCCGTA CCGATGCCGATGGTGACGATGCCAAGGCTGCCCAGCGCGTAGTACGTCAGTGGCTGGCGAAGAAAGGCATTACCGCGCCGCACCTGGTGATGGAGAACGG TTCCGGCCTGTCCCGCGCAGAACGCGTCAGCGCCCGTGAAATGGGAGCGATGCTGCAAGCCGCGTGGCATAGCCCGTATGCTGCCGAGTTCATCAGTTCG ATGCCGATTGCCGGCACCGACGGCACCATGCGCAAACGCCTGAAGACCACCGCGATGCGCGGTGAAGCCCACGTCAAGACCGGCACCCTGAACACCGTAC GCGCCATCTCCGGCTTCAGCCGCGACGTCAATGGCAACACGTGGGCAGTCGTGGCGATCCTCAATGACAAGGCACCGTTTGGCGCGTCGTCAGTACTGGA TCAAGTGCTGCTGGACCTCTATCGCCAACCGAAACTGCCAGACACGGCGTCGGTGCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGATCCTCCAGACACTGGAGATCACCTGTGGAGCGAGCCTGCTCGCGACAGCGGTCTAACATTCAACTCAGATGTTGACTGATAAACCGCTATCGCGA GCAGGCTCACTCCTAAAAGGGTTGTGTGTCAGGCCTTAGGTTTTCTGGGCCTCGACCCGATCACGTCCCGCCTGCTTCGCCGCATACACCCCCGAATCCG CTCGCAGCAACAGCGCATCCGCGCCCTCCCCGACGCGCCAACTGGCGATCCCGAAACTCGCGGTAACGAACCCCACGCAGTCAATCGGTGAACTGCGCAG CCCTTGCCACAACTGCATGGCCAGCACGTGCGCCTGCTCGCGGTCGGTGTCCGGGCAGAGCACCATGAATTCTTCTCCCCCAAGGCGACAGAACACGTCC GTGCGCCGCAGCCGATGACCAATGCGCTCGCACACGGCTTGCAACACCCGATCCCCCACGGCGTGGCCATGCTGGTCATTGATGCGTTTGAAGTGGTCGA
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MIKSLRPLLLASFILPLALSVSAAPINTALTPNVEKALKASKLQDSALSLVMIPLTGPGTPTVYNADVSVNPASTMKLVTTYAALEMLGPNHQWKTEFYT DGTLSGGILNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVTQITGDLVLDRGFFVQPQLPEFNDDGNDENKPFLVKPDSLMVNLKALRFVARNDGGRVLV SVEPPIASIRIENQVKAVNSKQCTGGVRYNPVTQPDGSMTVTVGGQLGDGCSSQTYLSLLDHATYTAGAVRAIWKELGGSIQGKDVLAATPGNAKLLARA YSPDLAEIIRDINKYSNNTMAQQLFLSLGQKFRTDADGDDAKAAQRVVRQWLAKKGITAPHLVMENGSGLSRAERVSAREMGAMLQAAWHSPYAAEFISS MPIAGTDGTMRKRLKTTAMRGEAHVKTGTLNTVRAISGFSRDVNGNTWAVVAILNDKAPFGASSVLDQVLLDLYRQPKLPDTASVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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