Pseudomonas sp. URMO17WK12:I12, D882_RS0103555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACAACCCCGACGTGAAGTACTACTTCATCTACGCGGTGTTGTTCATGGTTGTGCTGGCGGTGTTGTACATCAAGCATCGCTTGACCCGTATGCCGGTTG GCCGCGCCTGGGAAGCCTTGCGTGAAGACGAGATCGCCTGCCGCTCCATGGGCCTGAACCATGTACTGGTGAAGCTCTCGGCGTTCACCATCGGTGCGTC GACGGCCGGTCTGGCTGGCGTGTTCTTCGCCACCTATCAAGGCTTCGTCAACCCGACCTCGTTTACCTTCTTTGAATCGGCCCTGATCCTCGCCATCGTG GTACTTGGCGGCATGGGCTCGACCATCGGCGTGGTGATTGCAGCCTTCGTGCTGACCGTCGCCCCGGAGCTGCTGCGTGGCTTCGCGGAATACCGCGTGC TGCTGTTCGGCATCCTGATGGTGTTGATGATGATCTGGCGACCGCGCGGCCTGATTCGGATCAGCCGTACCGGTGTGACCCCGCGTAAAGGAGTAGCGCC
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| DNA Sequence for Gene |
>D882_RS0103555
ATGAGCGAAGTCGTACTCTCGGTCGAGAAGCTGATGATGCACTTTGGCGGCATCAAGGCGTTGAATGATGTCAGCCTGCAGGTCAAACGCAACTCGATCT TCGCCCTGATCGGCCCCAACGGCGCTGGCAAGACCACGGTGTTCAACTGCCTGACCGGGTTCTACAAGGCCTCCGGCGGCAAGATCGAACTGAACGTGCG CGGCGAGCAGACCAATGTCATCCAATTGCTGGGCGAAGCGTTCAAACCGACCGATTTCGTCTCGCCTAAATCCTTCGCCAGTCGTCTGTACTACAAGATG TTTGGCGGCACCCACCTGGTGAACCGGGCCGGGCTGGCGCGGACCTTCCAGAACATTCGCCTGTTCAAGGAAATGTCGGTGCTGGAAAACCTGCTGGTGG CCCAACACATGTGGGTCAACCGCAGCATGCTGGCCGGCATCCTCAACACCAAGGGCTACCGCAAGGCTGAAAGTGATGCGCTGGACCATGCTTTCTACTG GCTGGAAGTGGTGGACCTGGTGGATTGCGCCAACCGCCTCGCCGGCGAATTGTCCTACGGCCAACAGCGCCGCCTGGAAATCGCCCGGGCCATGTGCACC CGTCCGCAGATCATCTGCCTCGACGAACCGGCCGCCGGCCTCAACCCTCAGGAAACCGAAGCATTGAGCGCGATGATCCGGCTGCTGCGTGACGAGCACG ATCTGACCGTGGTGCTGATCGAACACGACATGGGCATGGTGATGAGTATTTCCGACCACATCGTGGTGCTGGACCACGGCATCGTCATCGCCGAGGGCGG CCCCGACGCGATCCGCAACGACCCGAAAGTGATTGCGGCCTACCTGGGCGCCGATGAAGAGGAAGTGGTGTTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCAACCGATCCTCGAACTCAAGGAACTGGACGTGTTTTACGGGCCGATCCAGGCCTTGAAGAAAGTCTCGTTGCACATCAATGAAGGTGAAACAGTCAG CCTGATCGGCTCCAATGGTGCCGGCAAGTCGACCCTGCTGATGTCGATTTTCGGCCAGCCGCGCGCGGCAGACGGGCAGATCATCTATCAGGGTGTGGAC ATCACCCACAAGTCGTCCCACTACATCGCGTCCAATGGCATCGCGCAATCGCCGGAAGGGCGGCGGGTGTTCCCCGACATGACTGTCGAGGAAAACCTGC TGATGGGCACCATCCCTATCGGTGACAAGTACGCCAAGGAAGACATGCAACGCATGTTCGAGTTGTTCCCAAGGCTTGAAGAGCGGCGCAACCAGCGGGC AATGACCATGTCCGGCGGCGAACAGCAAATGCTCGCCATCGCTCGTGCGTTGATGAGCCGGCCAAAACTGCTGTTGCTCGACGAGCCAAGCCTGGGGTTG
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| Amino Acid Sequence |
>ABC transporter
MSEVVLSVEKLMMHFGGIKALNDVSLQVKRNSIFALIGPNGAGKTTVFNCLTGFYKASGGKIELNVRGEQTNVIQLLGEAFKPTDFVSPKSFASRLYYKM FGGTHLVNRAGLARTFQNIRLFKEMSVLENLLVAQHMWVNRSMLAGILNTKGYRKAESDALDHAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCT RPQIICLDEPAAGLNPQETEALSAMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGIVIAEGGPDAIRNDPKVIAAYLGADEEEVVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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