Pseudomonas sp. URMO17WK12:I12, D882_RS0100770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTACCGCGAGCAAATGCGCAGCGTGCGCGCCAATGACCTGGTGATCGCCATCAGCTTCACGCCGTACGGCAAGGAGACGCAGCACTGCCTGCGCATCG CCCAGCATCAACAGGCGAAAACCCTGATCATCACCGACAGCAATCTCTCTCCCCTGGCCAAGCGCGCCAACACTCTTCTGCTCGTCAACGAAGGCAGTTC GTTTGCGTTCCGTTCATTGAGTGCAACCCTGTGCCTGTGCCAGGCGCTGTTTATCGCCGTGGCCTATCGACTGGAGTTGAAGGTCGACGATATTCACGAG CAGGTCGGGTTCGACGACTGACCGAGACGTTGACGTTTGGCTCCGCGCGCAGCGGCTGTCGAGGCAGAACCGAACCCACTGCGCCCAATCACTGGCTGCG ATCCAGCAGCCTGATGTAAATATTATTTTCATAAATTGATAAAAAGGAATAAATATTCTATTAATTGGATCTCTGAAAACAAGAATCCAAAGGATCTGTC
|
|
| DNA Sequence for Gene |
>D882_RS0100770
ATGCGCGAACTCGGAATCGGACTTATCGGCACGGGATTCATGGGTCGTGCCCATGCCTTGGCGTTTCGTAACGTCAGTGCGGCATTCGAACTGCCCTTCA CGCTTCACCTCGCCGCCCTGGCCGACGCCGACCCCGTTCGTGCGCAAGCATGCGCCACCGCCTGGGGCTTTGAGCACGCCTATGACGACTGGCAGCAATT GGTCGATGATCCCAAGGTCAACCTGATCGCCATCACCACACCCAACCACCTGCACTACCCGATGGCGATGTCCGCTATTCGCGCCGGCAAGGCGGTGTAC TGCGAAAAGCCGCTGGCGGTGAACCTTGAACAAGCCAATGCCATGCACCTGGCAGCCAAGAATGCAGGCGTCGTCACGCGTGTCGGCTACAACTACCAGC ACAACCCGATCATCGGCCTGGCAAGGGAACTGATACTGAACGGCAGTCTCGGCGAGATCATCTGCTTTCAAGGCGAATTCAGCGAAGACTTCATGGCCGA TCCAGCATCCCCTTGGTCGTGGCGCTGTGAGGCCGAACATGCCGGCGGGGCCCTGGCCGATCTGGGTAGCCACTTGCTCGCCATGGCGCGCCATCTGCTC GGCACTGTCGAAGCAGTGTGCGCCGATTCCCAGACCGTGCATCGTCAGCGCCCGGCCACGGCCGGTAGCCTGGAACCGCGTAACATTGCTGTCGATGATC AGACTCATGCCTTGCTGCGCTTTTCCAGCGGTGCGCGCGGTACCTTCAGCAGCAGTTGGCTCAAGCACGGTTACAAGAATCATCTGAGCTTCGAGATCAG TGGTACACAAGGCACCCTTGCGTTCGATCAGGAACGTTTGAATGAGTTACGCCTGTACCGCGCCGGGCAAGACGGATTCCAGCGTTTATTGGCCGGGCCG AACCTGCCCGGTTACGCAGCGTTCAGTCCGGCGCCGGGGCATCAGCTGGGCTACAACGAGTTGAAGACGCTGGAAGTGCATGAGCTGATCATGGCCTTGG CCGGGCACGGACAAGCCGGCACTGATTTCGAGCAAGCCTTTGAAGTGGAGCGACTGGCGACGGCGATTCGACTGGCGGCACGGGACCAGCGCTGGGTCAG TATCAGCGAGCTGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGCTGAAAAGGCTGCGCTAAATGGCGGCAGCTTTTCTATCAGTACGGGACACTGAAAATAAAAAAGGGCCGCGAGATAAAATCTCGCGACCCTTTTTAA ATATAGGGTCGGGACGGAGTGATTCGAACCTATGATGGCGAGCTAACGACTTCCTAACGTCGACACCCTATTGCATCAATCTCGCTGATTCAGTCTCGCG CCACTCAGAAAGCACTGTCAGATCTGTATGCGCGGGCTGTCGGTGTTTTGTCGTAGCACTGCGATTGCCGGCTTATCAGTGTCCAAGCCTTCCGTGAGGC TGCCCTGGCTGCAGTGGATTGGTTGCGAGGGATGGATTCGAACCATCGACCTTCGGGATATGAGCCCGACAAGCTGACCGCTGCTCTACCACGCATCTGA AACGAAAAAGCCCCGCACGATGGCGAGGCTTAGTAGGAGGAGACTTAATGAAAGTGCTTGAATTCGTACTTGGCGACGTTCGCTCTCATGTCATCAAGCA
|
|
| Amino Acid Sequence |
>1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
MRELGIGLIGTGFMGRAHALAFRNVSAAFELPFTLHLAALADADPVRAQACATAWGFEHAYDDWQQLVDDPKVNLIAITTPNHLHYPMAMSAIRAGKAVY CEKPLAVNLEQANAMHLAAKNAGVVTRVGYNYQHNPIIGLARELILNGSLGEIICFQGEFSEDFMADPASPWSWRCEAEHAGGALADLGSHLLAMARHLL GTVEAVCADSQTVHRQRPATAGSLEPRNIAVDDQTHALLRFSSGARGTFSSSWLKHGYKNHLSFEISGTQGTLAFDQERLNELRLYRAGQDGFQRLLAGP NLPGYAAFSPAPGHQLGYNELKTLEVHELIMALAGHGQAGTDFEQAFEVERLATAIRLAARDQRWVSISEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|