| Sep 9, 2008 |
PA4556
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA1874
|
Pseudomonas aeruginosa
PAO1 |
New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108.
|
Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
|
| Sep 9, 2008 |
PA1875
|
Pseudomonas aeruginosa
PAO1 |
New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108.
|
Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
|
| Sep 9, 2008 |
PA1876
|
Pseudomonas aeruginosa
PAO1 |
New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108.
|
Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
|
| Sep 9, 2008 |
PA1877
|
Pseudomonas aeruginosa
PAO1 |
New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108.
|
Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
|
| Sep 9, 2008 |
PA1163
|
Pseudomonas aeruginosa
PAO1 |
New function class: antibiotics resistance and susceptibility. New evidence reference (PMID): 14628055.
|
Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
|
| Sep 9, 2008 |
PA5308
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: dadR, dadAX regulator. New alternate protein name: transcriptional activator of dadAX DadR. New evidence reference (PMID): 18192388.
|
Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
|
| Sep 9, 2008 |
PA0296
|
Pseudomonas aeruginosa
PAO1 |
New gene name: spuI. New evidence reference (PMID): 12081945.
|
Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
|
| Sep 9, 2008 |
PA1409
|
Pseudomonas aeruginosa
PAO1 |
New evidence reference (PMID): 18192388.
|
Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
|
| Sep 9, 2008 |
PA0321
|
Pseudomonas aeruginosa
PAO1 |
New evidence reference (PMID): 18192388.
|
Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
|
| Sep 9, 2008 |
PA2634
|
Pseudomonas aeruginosa
PAO1 |
New gene name: aceA. New product name: isocitrate lyase AceA. New homology: 72% identical to isocitrate lyase(Colwellia maris). New evidence reference (PMID): 17319879.
|
Literature review. Approved by reference author. Jesus Campos-Garcia, Universidad Michoacana de San Nicolas de Hidalgo, Morelia, Michoacan, Mexico
|
| Sep 9, 2008 |
PA3014
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: fadB5. New genomic context: PsrA(PA3006) is a negative regulator of the faoAB operon. New evidence reference (PMID): 18524913.
|
Literature review. Approved by reference author. Tung T. Hoang, University of Manoa, Honolulu, HI
|
| Sep 9, 2008 |
PA3013
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: fadA5. New genomic context: PsrA(PA3006) is a negative regulator of the faoAB operon. New evidence reference (PMID): 18524913.
|
Literature review. Approved by reference author. Tung T. Hoang, University of Manoa, Honolulu, HI
|
| Sep 9, 2008 |
PA5483
|
Pseudomonas aeruginosa
PAO1 |
New function class: cell wall/LPS/capsule-adaptation. New function class: protection-secreted factors(toxins. New function class: enzymes. New function class: alginate). New evidence reference (PMID): 17981963.
|
Literature review. Raymond Lo and Fiona S. L. Brinkman, Simon Fraser University
|
| Sep 9, 2008 |
PA3648
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: opr86. New alternate protein name: outer membrane protein Opr86. New localization: outer membrane (class 1). New evidence reference (PMID): 18390657.
|
Literature review. Raymond Lo and Fiona S. L. Brinkman, Simon Fraser University
|
| Sep 9, 2008 |
PA2227
|
Pseudomonas aeruginosa
PAO1 |
New gene name: vqsM. New product name: AraC-type transcriptional regulator VqsM. New product name confidence: Class 1. New evidence reference (PMID): 16194239.
|
Literature review. Approved by reference author. Lian-Hui Zhang, Institute of Molecular and Cell Biology, Singapore.
|
| Sep 9, 2008 |
PA0457.1
|
Pseudomonas aeruginosa
PAO1 |
New CDS gene annotation added. Product name: hypothetical membrane protein. Product name confidence: Class 4. Transcription confirmed by targeted Reverse Transcription Polymerase Chain Reaction (RT-PCR).
|
Chi Kin Ho, David Mulder & Fiona Brinkman, Simon Fraser University
|
| Sep 9, 2008 |
PA0836.2
|
|
New CDS gene annotation added. Product name: hypothetical protein. Product name confidence: Class 4. Transcription confirmed by targeted Reverse Transcription Polymerase Chain Reaction (RT-PCR).
|
Chi Kin Ho, David Mulder & Fiona Brinkman, Simon Fraser University
|
| Sep 9, 2008 |
PA0143
|
Pseudomonas aeruginosa
PAO1 |
New product name: purine nucleosidase Nuh. New product name confidence: Class 1. New EC number : 3.2.2.1. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA0215
|
Pseudomonas aeruginosa
PAO1 |
New product name: malonate transporter MadL. New product name confidence: Class 2. New evidence reference (PMID): 9573154. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA0216
|
Pseudomonas aeruginosa
PAO1 |
New product name: malonate transporter MadM. New product name confidence: Class 2. New evidence reference (PMID): 9573154. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA0313
|
Pseudomonas aeruginosa
PAO1 |
New product name: L-cysteine transporter of ABC system YecS. New product name confidence: Class 3. New evidence reference (PMID): 4974392. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA0314
|
Pseudomonas aeruginosa
PAO1 |
New product name: L-cysteine transporter of ABC system FliY. New product name confidence: Class 3. New evidence reference (PMID): 4974392. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA0761
|
Pseudomonas aeruginosa
PAO1 |
New product name confidence: Class 2. New alternate protein name: L-aspartate oxidase(aerobic/anaerobic) NadB. New evidence reference (PMID): 7737518. New evidence reference (PMID): 6997723. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA1004
|
Pseudomonas aeruginosa
PAO1 |
New product name confidence: Class 2. New alternate protein name: L-aspartate oxidase (aerobic/anaerobic) NadA. New evidence reference (PMID): 7737518. New evidence reference (PMID): 6997723. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA1514
|
Pseudomonas aeruginosa
PAO1 |
New product name: ureidoglycolate hydrolaseYbbT. New product name confidence: Class 3. New EC number : 3.5.3.19. New evidence reference (PMID): 16503417. New evidence reference (PMID): 104142. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA1684
|
Pseudomonas aeruginosa
PAO1 |
New product name: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase MtnD. New product name confidence: Class 2. New EC number : 1.13.11.54. New EC number : 1.13.11.53. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA1818
|
Pseudomonas aeruginosa
PAO1 |
New product name: Orn/Arg/Lys decarboxylase LdcC. New product name confidence: Class 2. New EC number : 4.1.1.18. New evidence reference (PMID): 405455. New evidence reference (PMID): 14679195. New evidence reference (PMID): 6768834. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA2080
|
Pseudomonas aeruginosa
PAO1 |
New product name: kynureninase KynU. New product name confidence: Class 1. New EC number : 3.7.1.3. New evidence reference (PMID): 17337571. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA2366
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: puuD. New product name: uricase PuuD. New product name confidence: Class 2. New EC number : 1.7.3.3. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA2385
|
Pseudomonas aeruginosa
PAO1 |
New product name: 3-oxo-C12-homoserine lactone acylase PvdQ. New product name confidence: Class 1. New alternate protein name: C4-homoserine lactone acylase PvdQ. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA2579
|
Pseudomonas aeruginosa
PAO1 |
New product name: L-Tryptophan:oxygen 2,3-oxidoreductase (decyclizing) KynA. New product name confidence: Class 1. New EC number : 1.13.11.11. New evidence reference (PMID): 17337571. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA3004
|
Pseudomonas aeruginosa
PAO1 |
New product name: 5-methylthioadenosine phosphorylase MtnP. New product name confidence: Class 1. New EC number : 2.4.2.28. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA3169
|
Pseudomonas aeruginosa
PAO1 |
New product name: 5-methylthioribose-1-phosphate isomerase MtnA. New product name confidence: Class 2. New alternate protein name: probable initiation factor 2 subunit (class 3). New EC number : 5.3.1.23. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA4425
|
Pseudomonas aeruginosa
PAO1 |
New product name: sedoheptulose 7-phosphate isomerase GmhA. New product name confidence: Class 2. New evidence reference (PMID): 11751812. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA4457
|
Pseudomonas aeruginosa
PAO1 |
New alternate gene name: kdsD. New product name: arabinose-5-phosphate isomerase KdsD. New product name confidence: Class 2. New EC number : 5.3.1.13. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA5175
|
Pseudomonas aeruginosa
PAO1 |
New product name: 3,5-bisphosphate nucleotidase CysQ. New product name confidence: Class 2. New EC number : 3.1.3.7. New evidence reference (PMID): 18192387.
|
Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
|
| Sep 9, 2008 |
PA1803
|
Pseudomonas aeruginosa
PAO1 |
New evidence reference (PMID): 17259618.
|
Literature review. Approved by reference author Robert E. W. Hancock, University of British Columbia, Vancouver
|
| Sep 9, 2008 |
PA5000
|
Pseudomonas aeruginosa
PAO1 |
New gene name: wapR. New product name: alpha-1,3-rhamnosyltransferase WapR. New product name confidence: Class 1. New function class: Cell wall/LPS/capsule. New evidence reference (PMID): 18178733.
|
Literature review. Approved by reference author. Joseph S. Lam, University of Guelph, Ontario
|
| Sep 9, 2008 |
PA0705
|
Pseudomonas aeruginosa
PAO1 |
New gene name: migA. New product name: alpha-1,6-rhamnosyltransferase MigA. New product name confidence: Class 1. New function class: Cell wall/LPS/capsule. New evidence reference (PMID): 18178733.
|
Literature review. Approved by reference author. Joseph S. Lam, University of Guelph, Ontario
|
| Sep 9, 2008 |
PA3479
|
Pseudomonas aeruginosa
PAO1 |
New gene name: rhlA. New evidence reference (PMID): 18326581.
|
Literature review. Approved by reference author. Charles O. Rock, St. Jude Chidlrens Research Hospital, Memphis, Tennessee
|
| Sep 9, 2008 |
PA0867
|
Pseudomonas aeruginosa
PAO1 |
New gene name: mliC. New product name: membrane-bound lysozyme inhibitor of c-type lysozyme MliC. New product name confidence: Class 1. New function class: adaptation. New function class: protection. New homology: 27% identity with PliC ( S. Enteritidis). New localization: outer membrane (class 2). New evidence reference (PMID): 18369469.
|
Literature review. Approved by reference author. Chris W. Michiels, Katholieke Universiteit Leuven, Leuven, Belgium
|
| Sep 9, 2008 |
PA4550
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA4551
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA4552
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA4553
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA4554
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|
| Sep 9, 2008 |
PA4555
|
Pseudomonas aeruginosa
PAO1 |
New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737.
|
Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
|