| Jul 1, 2006 |
PA0688
|
Pseudomonas aeruginosa
PAO1 |
Removed alternate protein name pstS
|
Manjeet Bains, Robert EW Hancock, University of British Columbia, Canada
|
| Jul 1, 2006 |
PA1032
|
Pseudomonas aeruginosa
PAO1 |
New gene name: quiP. New product name: acyl-homoserine lactone acylase, QuiP. New product name rating: Class 1. New evidence reference (PubMed ID): 16461666. New comment: encodes an enzyme with a homoserine lactone-releasing, acyl-homoserine lactone(AHL)acylase activity specific towards long-chain AHLs.
|
Huang,JJ, Leadbetter,JR, Petersen,A, Whiteley,M.
|
| Jul 1, 2006 |
PA1091
|
Pseudomonas aeruginosa
PAO1 |
New gene name: fgtA. New product name: flagellar glycosyl transferase, FgtA. New product name rating: Class 1. New homology: 53% similar to orfN [P. aeruginosa PAK]. New genomic context: Upstream of FliC and FlaG homologs, as in the Riftia pachyptila endosymbiont. New evidence reference: Verma, Amrisha , Schirm, Michael , Arora, Shiwani K., Thibault, P , Logan, Susan M., Ramphal, Reuben Glycosylation of b-type flagellin of Pseudomonas aeruginosa: structural and genetic basis (unpublished).
|
Arora,SK, Logan,SM, Ramphal,R, Schirm,M, Thibault,P and A Verma.
|
| Jul 1, 2006 |
PA2011
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuE. New product name: 3-hydroxy-3-methylglutaryl-CoA lyase. New product name confidence: Class 2. New alternate gene name: gnyL. New alternate product name: HMG lyase, MvaB. New alternate product name: Hydroxymethylglutaryl-coenzymeA lyase, GnyH. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of liuRA-liuBCDE cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2012
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuD. New alternate gene name: mccA. New alternate gene name: gnyA. New product name: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing). New product name confidence: Class 1. New alternate product name: MccA. New alternate product name: alpha-subunit of geranoyl-CoA carboxylase, GnyA. New subcellular localization confidence: Class 1. New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished).New genomic context: Part of liuRA-liuBCDE cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2013
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuC. New product name: putative 3-methylglutaconyl-CoA hydratase. New product name confidence: Class 3. New subcellular localization: Cytoplasmic (Class 1). New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of liuRA-liuBCDE cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2014
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuB. New product name: methylcrotonyl-CoA carboxylase, beta-subunit. New product name confidence: Class 1. New alternate product name: MccB. New localization: Cytoplasmic. New localization confidence: Class 1. New evidence reference (PubMed ID): 16517656. New evidence reference (PubMed ID):16272386. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New genomic context: Part of liuRA-liuBCDE cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2015
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuA. New product name: putative isovaleryl-CoA dehydrogenase. New product name rating: Class 2. New alternate gene name: ivd. New alternate product name: Ivd. New evidence reference (PubMed ID): 16517656. New evidence reference (PubMed ID):16272386. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New genomic context: Part of liuRA-liuBCDE cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2016
|
Pseudomonas aeruginosa
PAO1 |
New gene name: liuR. New alternate gene name: gnyR. New product name: regulator of liu genes. Alternate product name: GnyR. New product name confidence: Class 1. New evidence reference (PubMed ID): 16517656. New genomic context: Part of liuRA-liuBCDE cluster.
|
Jesus, Campos-Garcia, Universidad Michoacana, Mexico. Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany.
|
| Jul 1, 2006 |
PA2234
|
Pseudomonas aeruginosa
PAO1 |
New subcellular localization: Extracellular. New subcellular localization rating: Class 1. New evidence reference: 16598021.
|
Brinkman, FSL, Campisano,A, Lo, RC,Overhage,J, Rehm,BHA, Schemionek,M, Schroeder,C.
|
| Jul 1, 2006 |
PA2885
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuR. New product name: putative repressor of atu genes. New product name rating: Class 1. New genomic context: Part of atuRABCDEFGH cluster. New evidence reference: Jendrossek, Dieter , Hoschle, Birgit , Forster-Fromme, Karin Identification of genes and proteins necessary for catabolism of acyclic terpenes and leucine/isovalerate in Pseudomonas aeruginosa (unpublished).
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2886
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuA. New product name: expressed protein with apparent function in citronellol catabolism. New product name rating: Class 3. New comment: knock out in atuA (and constitutive expression of downstream genes from a lac promotor) resulted in negative phenotype on citronellol. 3-hydroxy-3-isohexenylglutaryl-CoA:acetate- lyase is only missing enzyme of the Atu pathway; all other functions can be covered by the other atu genes. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New genomic context: Part of atuRABCDEFGH cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2887
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuB. New product name: putative dehydrogenase involved in catabolism of citronellol. New product name confidence: Class 3. New comment: Essential for catabolism of acyclic terpenes (shown by knock-out). New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New genomic context: Part of atuRABCDEFGH cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2888
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuC. New product name: geranyl-CoA carboxylase, beta-subunit. New product name confidence: Class 1. New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of atuRABCDEFGH cluster. New homology: 63% similarity with LiuB [Pseudomonas aeruginosa]
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico
|
| Jul 1, 2006 |
PA2889
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuD. New product name: putative citronellyl-CoA dehydrogenase involved in catabolism of citronellol. New product name confidence: Class 3. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of atuRABCDEFGH cluster. New homology: 34% identity with LiuA [Pseudomonas aeruginosa].
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico
|
| Jul 1, 2006 |
PA2890
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuE. New product name: putative isohexenylglutaconyl-CoA hydratase. New alternate product name: gamma-carboxygeranyl-CoA hydratase. New product name confidence: Class 3. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of atuRABCDEFGH cluster. New homology: 29%identity to LiuC [Pseudomonas aeruginosa]
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico
|
| Jul 1, 2006 |
PA2891
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuF. New product name: geranyl-CoA carboxylase, alpha-subunit (biotin-containing). New product name rating: Class 1. New subcellular localization rating: Class 1. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID):16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of atuRABCDEFGH cluster. New homology: 50% identity with PP4067 [Pseudomonas putida].
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
|
| Jul 1, 2006 |
PA2892
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuG. New product name: putative short chain dehydrogenase involved in catabolism of citronellol. New product name rating: Class 3. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID):16272386. New genomic context: Part of atuRABCDEFGH cluster. New comment: Gene product not essential for growth on citronellol (shown by insertion mutagenesis) but protein is expressed (confirmed by SDS-PAGE). New genomic context: Part of atuRABCDEFGH cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany.
|
| Jul 1, 2006 |
PA2893
|
Pseudomonas aeruginosa
PAO1 |
New gene name: atuH. New product name: putative very-long chain acyl-CoA synthetase. New product name confidence: Class 4. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID): 16272386. New genomic context: Part of atuRABCDEFGH cluster.
|
Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany.
|
| Jul 1, 2006 |
PA4839
|
Pseudomonas aeruginosa
PAO1 |
New evidence reference (PubMed ID): 12634339.
|
Itoh,Y, Nakada, Y., National Food Research Institute, Japan
|
| Jul 1, 2006 |
PA5369
|
Pseudomonas aeruginosa
PAO1 |
New gene name: pstS. New product name: phosphate ABC transporter, periplasmic phosphate-binding protein, PstS. New product name rating: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New PseudoCAP function class: Transport of small molecules. New evidence reference(PubMed ID): 12596240. New evidence reference: Worobec, B., R. Siehnel, P. Gladman and R.E.W. Hancock. 1988. Gene cloning and expression of the Pseudomonas aeruginosa periplasmic phosphate-binding protein. FEMS Microbiol. Lett. 52:235-238. New evidence reference (PubMed ID): 6436026. New genomic context: Downstream of the inner membrane phosphate transport system.
|
Manjeet Bains, Robert EW Hancock, University of British Columbia, Canada
|