Pseudomonas aeruginosa BWHPSA007

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA007
Species Pseudomonas aeruginosa
Strain BWHPSA007
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA007
Annotated Genes 6318
Partial Genes 38
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source abdominal abcess
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1128
nuoD
27		 guaA
9		 aroE
5		 ppsA
4		 mutL
11		 acsA
39		 trpE
2
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481565.1
Assembly Status latest
Scaffolds 6
Contigs 31
Contig N50 848663
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360679
NCBI Taxonomy ID 1402507
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6310
CDS 6238
tRNA 63
rRNA 9
pseudo 8

Subcellular Localization

Localization Count
Cytoplasmic 2777
Unknown 1499
Cytoplasmic Membrane 1364
Periplasmic 179
Outer Membrane 176
Unknown (This protein may have multiple localization sites) 159
Extracellular 84
Flagellar 16
T3SS 4
Fimbrial 3

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF