Pseudomonas aeruginosa BWHPSA023

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA023
Species Pseudomonas aeruginosa
Strain BWHPSA023
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA023
Annotated Genes 6418
Partial Genes 43
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source Wound
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 17
acsA
11		 guaA
1		 nuoD
9		 ppsA
4		 mutL
7		 aroE
5		 trpE
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481245.1
Assembly Status latest
Scaffolds 16
Contigs 35
Contig N50 707387
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360695
NCBI Taxonomy ID 1402523
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6413
CDS 6339
tRNA 62
rRNA 12
pseudo 5

Subcellular Localization

Localization Count
Cytoplasmic 2836
Cytoplasmic Membrane 1425
Periplasmic 174
Outer Membrane 166
Extracellular 73
Unknown 1512
Unknown (This protein may have multiple localization sites) 153
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

16 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF