Pseudomonas aeruginosa BL14

Strain Overview
Organism Name Pseudomonas aeruginosa BL14
Species Pseudomonas aeruginosa
Strain BL14
Description/Title Generic sample from Pseudomonas aeruginosa BL14
Annotated Genes 6535
Partial Genes 20
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source eye
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
ppsA
2		 trpE
4		 nuoD
1		 aroE
11		 guaA
3		 mutL
13		 acsA
38
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000480865.1
Assembly Status latest
Scaffolds 8
Contigs 24
Contig N50 932770
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360727
NCBI Taxonomy ID 1402555
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6529
CDS 6449
tRNA 66
rRNA 14
pseudo 6

Subcellular Localization

Localization Count
Cytoplasmic 2961
Cytoplasmic Membrane 1411
Periplasmic 181
Outer Membrane 183
Extracellular 76
Unknown 1483
Unknown (This protein may have multiple localization sites) 154
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

8 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF