Pseudomonas aeruginosa BL16

Strain Overview
Organism Name Pseudomonas aeruginosa BL16
Species Pseudomonas aeruginosa
Strain BL16
Description/Title Generic sample from Pseudomonas aeruginosa BL16
Annotated Genes 6310
Partial Genes 19
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source corneal scraping
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 253
guaA
16		 mutL
12		 ppsA
6		 trpE
3		 aroE
4		 nuoD
1		 acsA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000480825.1
Assembly Status latest
Scaffolds 10
Contigs 23
Contig N50 1675485
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360729
NCBI Taxonomy ID 1402557
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6307
CDS 6227
tRNA 67
rRNA 13
pseudo 3

Subcellular Localization

Localization Count
Cytoplasmic 2773
Unknown 1478
Cytoplasmic Membrane 1380
Outer Membrane 185
Periplasmic 183
Unknown (This protein may have multiple localization sites) 149
Extracellular 79
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

10 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF