Pseudomonas aeruginosa BL25

Strain Overview
Organism Name Pseudomonas aeruginosa BL25
Species Pseudomonas aeruginosa
Strain BL25
Description/Title Generic sample from Pseudomonas aeruginosa BL25
Annotated Genes 6047
Partial Genes 30
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source Eye
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 313
acsA
47		 ppsA
11		 guaA
7		 mutL
6		 aroE
8		 trpE
40		 nuoD
8
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000480645.1
Assembly Status latest
Scaffolds 7
Contigs 22
Contig N50 1009843
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360738
NCBI Taxonomy ID 1402566
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6044
CDS 5962
tRNA 67
rRNA 15
pseudo 3

Subcellular Localization

Localization Count
Cytoplasmic 2711
Cytoplasmic Membrane 1336
Periplasmic 178
Outer Membrane 166
Extracellular 84
Unknown 1337
Unknown (This protein may have multiple localization sites) 150
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

7 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF