| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa C40 |
| Species | Pseudomonas aeruginosa |
| Strain | C40 |
| Description/Title | Generic sample from Pseudomonas aeruginosa C40 |
| Annotated Genes | 6130 |
| Partial Genes | 20 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Isolation Source | environmental isolate |
| Sample Provider | |
|---|---|
| Name | Susanna Hamilton |
| suhamil@broadinstitute.org | |
| Institution | Broad Institute |
| Date Collected | unknown |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 167 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 4 |
| Contigs | 22 |
| Contig N50 | 820648 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02360746 |
| NCBI Taxonomy ID | 1402574 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 6125 |
| CDS | 6053 |
| tRNA | 63 |
| rRNA | 9 |
| pseudo | 5 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2728 |
| Unknown | 1379 |
| Cytoplasmic Membrane | 1374 |
| Periplasmic | 173 |
| Outer Membrane | 168 |
| Unknown (This protein may have multiple localization sites) | 152 |
| Extracellular | 79 |
| Flagellar | 17 |
| Fimbrial | 8 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa C40 genomic scaffold adgfO-supercont1.1, whole genome shotgun sequence. | 4417742 bp | 66.1% |
Replicon details
|
| Pseudomonas aeruginosa C40 genomic scaffold adgfO-supercont1.2, whole genome shotgun sequence. | 1265820 bp | 65.9% |
Replicon details
|
| Pseudomonas aeruginosa C40 genomic scaffold adgfO-supercont1.3, whole genome shotgun sequence. | 717691 bp | 65.9% |
Replicon details
|
| Pseudomonas aeruginosa C40 genomic scaffold adgfO-supercont1.4, whole genome shotgun sequence. | 230011 bp | 66.1% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |